View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19062_low_13 (Length: 390)

Name: NF19062_low_13
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19062_low_13
NF19062_low_13
[»] chr1 (2 HSPs)
chr1 (18-287)||(48492410-48492679)
chr1 (347-379)||(48492739-48492771)
[»] chr7 (8 HSPs)
chr7 (18-287)||(32635947-32636218)
chr7 (71-144)||(23559849-23559926)
chr7 (71-144)||(44370639-44370716)
chr7 (71-144)||(44379493-44379570)
chr7 (216-287)||(23559924-23559993)
chr7 (216-287)||(44370572-44370641)
chr7 (216-287)||(44379426-44379495)
chr7 (347-379)||(44554840-44554872)
[»] chr5 (4 HSPs)
chr5 (71-141)||(19907315-19907385)
chr5 (71-152)||(27692154-27692239)
chr5 (216-285)||(19907232-19907299)
chr5 (221-287)||(27692107-27692171)
[»] chr6 (2 HSPs)
chr6 (71-144)||(20714026-20714103)
chr6 (216-287)||(20713959-20714028)
[»] chr4 (2 HSPs)
chr4 (71-144)||(49227363-49227440)
chr4 (216-287)||(49227296-49227365)
[»] scaffold0148 (1 HSPs)
scaffold0148 (349-379)||(15924-15954)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 48492410 - 48492679
Alignment:
Q  18 aattatccctgtatatctgactaaaaagatcacaagcaagttattnnnnnnnngcacattgtctaagaacacaaaacaaagactagtaaacaatccataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||||||||    
T  48492410 aattatccctgtatatctgactaaaaagatcacaagcaagttattaaaaaaaagcacattgtctaagaacacaaaacaaagagtagtaaacaatccataa 48492509  T
Q  118 taattagaatcaagctaagaattagagctgttagtaaaaaattgatcaattaaccctcatattagtaaaaaatccatctgataatacaagaaaaacatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48492510 taattagaatcaagctaagaattagagctgttagtaaaaaattgatcaattaaccctcatattagtaaaaaatccatctgataatacaagaaaaacatga 48492609  T
Q  218 gatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  48492610 gatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcactttagc 48492679  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 48492739 - 48492771
Alignment:
Q  347 cctttggtcctctaacttatttgttgttttcat 379  Q
    |||||||||||||||||||||||||||||||||    
T  48492739 cctttggtcctctaacttatttgttgttttcat 48492771  T

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Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 32636218 - 32635947
Alignment:
Q  18 aattatccctgtatatctgactaaaaagatcacaagcaagttattnnnnnnnngcacattgtctaagaacacaaaacaaagactagtaaacaatccataa 117  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| | |||||||||||||||||    
T  32636218 aattatcactgtatagctgactaaaaagatcacaagcaagttattaaaaaaaagcacattgtctaagaacacaaaacaaatagtagtaaacaatccataa 32636119  T
Q  118 taattagaatcaagctaagaattagagctgttagtaaaaaattgatcaattaaccctcatattag--taaaaaatccatctgataatacaagaaaaacat 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  32636118 taattagaatcaagccaagaattagagctgttagtaaaaaattgatcaattaaccctcatattagcaaaaaaaatccatctgataatacaagaaaaacat 32636019  T
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32636018 tgaatagaattagagctgttagtcactgagtcacataagattctgattcctcatattaaccctcacattagc 32635947  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 23559849 - 23559926
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagag 144  Q
    |||||||||||||||||||||||||||||  | ||||    |||| ||||||||||||||||||||||||||||||||    
T  23559849 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagag 23559926  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 44370716 - 44370639
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagag 144  Q
    |||||||||||||||||||||||||||||  | ||||    |||| ||||||||||||||||||||||||||||||||    
T  44370716 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagag 44370639  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 44379570 - 44379493
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagag 144  Q
    |||||||||||||||||||||||||||||  | ||||    |||| ||||||||||||||||||||||||||||||||    
T  44379570 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagag 44379493  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 23559924 - 23559993
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| ||||||||  ||||||||||||||||||    
T  23559924 gagatagaattagagatgttagtcaccgagtcac--aagattcagattcctcgtattaaccctcacattagc 23559993  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 44370641 - 44370572
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| ||||||||  ||||||||||||||||||    
T  44370641 gagatagaattagagatgttagtcaccgagtcac--aagattcagattcctcgtattaaccctcacattagc 44370572  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 44379495 - 44379426
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    ||||| ||||||||| |||||||||| ||||||||  |||||| ||||||||  ||||||||||||||||||    
T  44379495 gagatggaattagagatgttagtcaccgagtcaca--agattcagattcctcgtattaaccctcacattagc 44379426  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 44554872 - 44554840
Alignment:
Q  347 cctttggtcctctaacttatttgttgttttcat 379  Q
    |||||||||||||||||||||||||||||||||    
T  44554872 cctttggtcctctaacttatttgttgttttcat 44554840  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 19907385 - 19907315
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaacaatccataataattagaatcaagctaagaatta 141  Q
    |||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||||||||||||||    
T  19907385 gcacattgtctaagaacacaaaacaaagagaaataaacaatgcataataattagaatcaagctaagaatta 19907315  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 27692239 - 27692154
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagagctgttagt 152  Q
    |||||||||||||||||||||||||||||  | ||||    |||| |||||||||||||||||||||||||||||||| |||||||    
T  27692239 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagagatgttagt 27692154  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 19907299 - 19907232
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacatta 285  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||||||||||  ||||||||||||||||    
T  19907299 gagatagaattagagatgttagtcactgagtcac--aagattctgattcctcgtattaaccctcacatta 19907232  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 27692171 - 27692107
Alignment:
Q  221 agaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    |||||||||| |||||||||| ||||||||  |||||| ||||||||  ||||||||||||||||||    
T  27692171 agaattagagatgttagtcaccgagtcaca--agattcagattcctcgtattaaccctcacattagc 27692107  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 20714103 - 20714026
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagag 144  Q
    |||||||||||||||||||||||||||||  | ||||    |||| ||||||||||||||||||||||||||||||||    
T  20714103 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagag 20714026  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 20714028 - 20713959
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    ||||||||||||||| |||||||||| |||||||  ||||||| ||||||||  ||||||||||||||||||    
T  20714028 gagatagaattagagatgttagtcaccgagtcac--aagattcagattcctcgtattaaccctcacattagc 20713959  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 49227440 - 49227363
Alignment:
Q  71 gcacattgtctaagaacacaaaacaaagactagtaaa----caatccataataattagaatcaagctaagaattagag 144  Q
    |||||||||||||||||||||||||||||  | ||||    |||| ||||||||||||||||||||||||||||||||    
T  49227440 gcacattgtctaagaacacaaaacaaagagaaataaataaacaatgcataataattagaatcaagctaagaattagag 49227363  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 49227365 - 49227296
Alignment:
Q  216 gagatagaattagagctgttagtcactgagtcacataagattctgattcctcaaattaaccctcacattagc 287  Q
    ||||| ||||||||| |||||||||| ||||||||  |||||| ||||||||  ||||||||||||||||||    
T  49227365 gagatggaattagagatgttagtcaccgagtcaca--agattcagattcctcgtattaaccctcacattagc 49227296  T

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Target: scaffold0148 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 379
Target Start/End: Complemental strand, 15954 - 15924
Alignment:
Q  349 tttggtcctctaacttatttgttgttttcat 379  Q
    |||||||||||||||||||||||||||||||    
T  15954 tttggtcctctaacttatttgttgttttcat 15924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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