View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_16 (Length: 364)
Name: NF19062_low_16
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 38628691 - 38628475
Alignment:
| Q |
18 |
caagtgtttttaatacattagtagaagagatgaaagcaatgggaattgcagtaaatgatgactctcaatgtacagaggtaatggctcccgtagctcacag |
117 |
Q |
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| T |
38628691 |
caagtgtttttaatacattagtagaagagatgaaagcaatgggaattgcagtaaatgatgactctcaatgtacagaggtaatggctcccgtagctcacag |
38628592 |
T |
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| Q |
118 |
tgataggagcccagtcctacttctgatgggaggaggtatgggagctggcaagagcactgtactcaaggatattctcaaagagtaagcaattacagtttct |
217 |
Q |
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| T |
38628591 |
tgataggagcccagtcctacttctgatgggaggaggtatgggagctggcaagagcactgtactcaaggatattctcaaagagtaagcaattacagtttct |
38628492 |
T |
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| Q |
218 |
gaacaaaaattaaacat |
234 |
Q |
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| T |
38628491 |
gaacaaaaattaaacat |
38628475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 263 - 353
Target Start/End: Complemental strand, 38628446 - 38628355
Alignment:
| Q |
263 |
agttctgtataaaataaagtctacgcataatggattgtttgagcatagattaatcttcaag-tattaagaaaaattgtgcaatagaattcat |
353 |
Q |
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| T |
38628446 |
agttctgtataaaataaagtctacgcataatggattgtttgagcatagattaatcttcaagttattaagaaaaattgtgcaatagaattcat |
38628355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 31168522 - 31168713
Alignment:
| Q |
18 |
caagtgtttttaatacattagtagaagagatgaaagcaatgggaattgcagtaaatgatgactctcaatgtacagaggtaatggctcccgtagctcacag |
117 |
Q |
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| T |
31168522 |
caagggttttcaatacactagtagaagagatgaaagcaatgggacttgtatcaaatgacgaaaatcgctgcacagaggtgatggcaccagtggctcacag |
31168621 |
T |
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| Q |
118 |
tgataggagcccagtcctacttctgatgggaggaggtatgggagctggcaagagcactgtactcaaggatattctcaaagagtaagcaatta |
209 |
Q |
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| T |
31168622 |
tgataggagccctgtgctccttttcatgggcggtggtatgggagctggcaagagcacggtgcttaaagatattctcaaagagtaagaaatta |
31168713 |
T |
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