View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_18 (Length: 334)
Name: NF19062_low_18
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 5 - 334
Target Start/End: Original strand, 6125185 - 6125514
Alignment:
| Q |
5 |
gagcagcacagacccacatgcggatatcaaagaaatctcggacttgtgcatctttgtataccatcatagcaagaactgtctttcctataccacccatacc |
104 |
Q |
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| T |
6125185 |
gagcaacacacacccacatgcggatatcaaagaaatctcggacttgtgcatctttgtataccatcatagcaagaactgtctttcctataccacccatacc |
6125284 |
T |
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| Q |
105 |
aacaataccaatcagagaatcatcagaatgtttctcctcagatggttccattaacaggctatcagttggttccattaacaggcttattatcgcctgtttc |
204 |
Q |
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| T |
6125285 |
aacaataccaatcagagaatcatcagaatgtttctcctcagatggttccattaacagtctatcagttggttccattaacaggcttattatcgcctgtttc |
6125384 |
T |
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| Q |
205 |
tcctcttctctgccaatcattactggttcattcctaacataagaatgttctacctttgccagtccccttgccggtccccttgccagttgttcccatttgt |
304 |
Q |
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| T |
6125385 |
tcctcttctctgccaatcattactggttcattcctaacataagaatgttctaccattgccagtccccttgccggttcccttgccagttggtcccatttga |
6125484 |
T |
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| Q |
305 |
tcatatgctctaaactctttcctatctcat |
334 |
Q |
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| T |
6125485 |
tcatatactctaaattctttcctatctcat |
6125514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 6114309 - 6114208
Alignment:
| Q |
15 |
gacccacatgcggatatcaaagaaatctcggacttgtgcatctttgtataccatcatagcaagaactgtctttcctataccacccataccaacaatacca |
114 |
Q |
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| T |
6114309 |
gacccatatgcagatatcaaagaaacctttgacttgtctgtcattgtatatcatctgggcaacagttgtcttgcctataccacccataccaacaatagca |
6114210 |
T |
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| Q |
115 |
at |
116 |
Q |
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| T |
6114209 |
at |
6114208 |
T |
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