View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19062_low_21 (Length: 320)

Name: NF19062_low_21
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19062_low_21
NF19062_low_21
[»] chr8 (2 HSPs)
chr8 (210-304)||(42759628-42759722)
chr8 (11-109)||(42759433-42759531)
[»] chr5 (2 HSPs)
chr5 (222-300)||(1402130-1402208)
chr5 (11-106)||(1402306-1402400)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 42759628 - 42759722
Alignment:
Q  210 gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42759628 gaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgca 42759722  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 42759433 - 42759531
Alignment:
Q  11 cagagaattacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaactt 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  42759433 cagagaattacttagggaaaaatataaatggaattgaaatgaaactagatacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaactt 42759531  T

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Target: chr5 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 1402208 - 1402130
Alignment:
Q  222 aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1402208 aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaa 1402130  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 1402400 - 1402306
Alignment:
Q  11 cagagaattacttagggaaaaatataaatggaattgaaatgaaattggatacttatattaaacagaaatagtctggaacaaaatagatttggcaaa 106  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  1402400 cagagaattacttagggcaaaatataaatggaattgaaatgaaactggatactta-attaaacagatatagtcttgaacaaaatagatttggcaaa 1402306  T

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