View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_23 (Length: 304)
Name: NF19062_low_23
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 28215532 - 28215263
Alignment:
| Q |
24 |
ttgattggttatgaaatagtagtgaatactaatagatatcctaaattttttgtgttctatttcttgttggttttctttgctaaattatcttcttgcttta |
123 |
Q |
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|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28215532 |
ttgattggttatgaaatagt---gaataccaataaatatcctaaattttttgtgttctatttcttgttggttttctttgctaaattatcttcttgctttg |
28215436 |
T |
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| Q |
124 |
ataatggtattgattttctgttgctgaatcagggttgtgatgcttccttgttgttggaggatagaaacatttcctatgagaagcaagctattccaaatca |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28215435 |
ataatggtattgattttctgttgctgaatcagggttgtgatgcatccttgttgttggaggatagaaacatttcctatgagaagcaggctattccaaatca |
28215336 |
T |
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| Q |
224 |
aacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctct |
296 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28215335 |
aacattaaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgtctct |
28215263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 142 - 296
Target Start/End: Original strand, 28220830 - 28220993
Alignment:
| Q |
142 |
tgttgctgaatcagggttgtgatgcttccttgttgttggagga---------tagaaacatttcctatgagaagcaagctattccaaatcaaacattgaa |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28220830 |
tgttgctgaatcagggttgtgatgcttccttgttgttggaggacaatggtgatagaaacagttcctatgagaagcaagctattccaaatcaaacattgaa |
28220929 |
T |
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| Q |
233 |
aggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctct |
296 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28220930 |
aggtaatgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgtctct |
28220993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 32309680 - 32309778
Alignment:
| Q |
194 |
ttcctatgagaagcaagctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtcccggcgttgt |
292 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32309680 |
ttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtggaacaagcatgtcccggcgttgt |
32309778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 183 - 292
Target Start/End: Original strand, 32305536 - 32305645
Alignment:
| Q |
183 |
gatagaaacatttcctatgagaagcaagctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtc |
282 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
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| T |
32305536 |
gatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggatcaagcatgtc |
32305635 |
T |
|
| Q |
283 |
ccggcgttgt |
292 |
Q |
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|||||||||| |
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| T |
32305636 |
ccggcgttgt |
32305645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 32565165 - 32565056
Alignment:
| Q |
183 |
gatagaaacatttcctatgagaagcaagctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtc |
282 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
32565165 |
gatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaggaggtggaacaagcatgtc |
32565066 |
T |
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| Q |
283 |
ccggcgttgt |
292 |
Q |
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||||| |||| |
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| T |
32565065 |
ccggcattgt |
32565056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 292
Target Start/End: Complemental strand, 32814788 - 32814679
Alignment:
| Q |
183 |
gatagaaacatttcctatgagaagcaagctattccaaatcaaacattgaaaggttttgacaaagttgacttgattaaggaggaggtcgaacaagcatgtc |
282 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||| |
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| T |
32814788 |
gatagaaacggttcctatgagaagcaggctattccaaatcaaacattgaaaggttttgacaaagttgacttgatcaaggaagaggtggagcaagcatgtc |
32814689 |
T |
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| Q |
283 |
ccggcgttgt |
292 |
Q |
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|||||||||| |
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| T |
32814688 |
ccggcgttgt |
32814679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 28220694 - 28220809
Alignment:
| Q |
27 |
attggttatgaaatagtagtgaatactaatagatatcctaaattttttgtgttctatttcttgttggttttctttgctaaattatcttcttgctttaata |
126 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
28220694 |
attggttatgaaatagt---gaatactaatagatatcctaaattttttgtgttctgattcttgttggttttctttgctaaattattttcttgctttgata |
28220790 |
T |
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| Q |
127 |
atggtattgattttctgtt |
145 |
Q |
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||||||| |||||||||| |
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| T |
28220791 |
ttggtattcattttctgtt |
28220809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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