View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_27 (Length: 250)
Name: NF19062_low_27
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 7907105 - 7907341
Alignment:
| Q |
13 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
112 |
Q |
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| T |
7907105 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
7907204 |
T |
|
| Q |
113 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7907205 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
7907304 |
T |
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| Q |
213 |
caacaactgcaatggcaaacctttggagctcaccccc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7907305 |
caacaactgcaatggcaaacctttggagctcaccccc |
7907341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 8001242 - 8001006
Alignment:
| Q |
13 |
aaaataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001242 |
aaaataacgattcttgataaaaatcaatgacaaatcacatagtgatatcatcaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggc |
8001143 |
T |
|
| Q |
113 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
212 |
Q |
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| T |
8001142 |
ctgagcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatgg |
8001043 |
T |
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| Q |
213 |
caacaactgcaatggcaaacctttggagctcaccccc |
249 |
Q |
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| T |
8001042 |
caacaactgcaatggcaaacctttggagctcaccccc |
8001006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 24 - 249
Target Start/End: Complemental strand, 51516531 - 51516307
Alignment:
| Q |
24 |
tcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatga |
123 |
Q |
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|||||| ||||||||| |||| ||||||||||||||| ||| | |||||||||| ||||| |||||| ||| |||||||||||||||||||||||| |
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| T |
51516531 |
tcttgacaaaaatcaatgacagtgcacatagtgatatcacaaatatataaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatga |
51516433 |
T |
|
| Q |
124 |
ccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgca |
223 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
51516432 |
tcgaacaacttgggcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgca |
51516333 |
T |
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| Q |
224 |
atggcaaacctttggagctcaccccc |
249 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
51516332 |
atggcaaacctttggagctcaccccc |
51516307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 1302544 - 1302744
Alignment:
| Q |
50 |
catagtgatatcaacaatgtttaaagcagaaactacaaagg-aaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagc |
148 |
Q |
| |
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||||||||||| ||||| |||||||||||| ||||| | ||| ||||| |||||||| |||| ||||||||||| |||||||| |||||||||||| |
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| T |
1302544 |
catagtgatattgacaatatttaaagcagaagctacagatataaaataaacagacctattatgccttagcaatgaccggacaacttgggcagctttcagc |
1302643 |
T |
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| Q |
149 |
ctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcacccc |
248 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||| |
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| T |
1302644 |
ctctgtttcacatcaagataactagaaggttcatcaaacatgtatatctccgcattttggatggcaatacctgcaatggcaaacctttgaagctcacccc |
1302743 |
T |
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| Q |
249 |
c |
249 |
Q |
| |
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| |
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| T |
1302744 |
c |
1302744 |
T |
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