View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_3 (Length: 576)
Name: NF19062_low_3
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 75 - 559
Target Start/End: Original strand, 41497222 - 41497706
Alignment:
| Q |
75 |
aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata |
174 |
Q |
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| T |
41497222 |
aaagaaaaccaactaatataatctatgtaaccttttataatgtgaattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcata |
41497321 |
T |
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| Q |
175 |
cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat |
274 |
Q |
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| T |
41497322 |
cagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatcttctctttagtattactttttgttctagagctcctcat |
41497421 |
T |
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| Q |
275 |
atatatcatatcagatgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaac |
374 |
Q |
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| T |
41497422 |
atatatcatatcatatgagaaaggaaatggagtttcttcttctatggccctgtattaggattcactaattcagactacataggagaattggatttgaaac |
41497521 |
T |
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| Q |
375 |
aaaggaaatagtaaaaataaacataaaagaacacaatttcaggattagttactcgtgtaccgtattttcttgcaccctgattttgtaagggttgagttta |
474 |
Q |
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| T |
41497522 |
aaaggaaatagtaaaaataaacataaaagaacacaatttcaggattagatactcgtgtgccgtattttcttgcaccctgattttgtaagggttgagtcta |
41497621 |
T |
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| Q |
475 |
actcgacacaaattttaaattggtacgagagtgaagtgttgagttaagttcaaaccaaattctaagactcacctaggttataaat |
559 |
Q |
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| T |
41497622 |
actcgacacaaattttaaattggtacgaaagtgaagggttgaattaagttcaaaccaaattctaagactcacctaggttataaat |
41497706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 119 - 235
Target Start/End: Original strand, 41491033 - 41491149
Alignment:
| Q |
119 |
aattatatcaggtgaattgggatctcgtgaagagaaatatggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttcca |
218 |
Q |
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| T |
41491033 |
aattacattaggtgaattgggacctaatgaagagatatgtggtgcctctgctcattcagattatggcatgatcactctcctattaaccaacggtgttcca |
41491132 |
T |
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| Q |
219 |
ggactgcaggttctcat |
235 |
Q |
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| T |
41491133 |
ggactgcaggttctcat |
41491149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 158 - 238
Target Start/End: Original strand, 41483226 - 41483306
Alignment:
| Q |
158 |
tggtgcctctcctcatacagattatggcatgatcactctcctattgaccaacggtgttccaggactgcaggttctcatctt |
238 |
Q |
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| T |
41483226 |
tggtgcctctgctcattcagattatggcatgatcactctcctaatcaccaatggtgttccaggactacaggttcacatctt |
41483306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 41497154 - 41497198
Alignment:
| Q |
10 |
attattctaaagttttttctgccgtactttattagtagagtcaag |
54 |
Q |
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| T |
41497154 |
attaatctaaagttttttctgccgtactttattagtagagtcaag |
41497198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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