View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_30 (Length: 249)
Name: NF19062_low_30
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 27062741 - 27062969
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
27062741 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcgtt------catcaaactcaacttaa |
27062834 |
T |
|
| Q |
101 |
gtcttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27062835 |
gtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
27062934 |
T |
|
| Q |
201 |
catggggcattgtggaaatggttgtgtagttattg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
27062935 |
catggggcattgtggaaatggttgtgtagttattg |
27062969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 27069811 - 27070044
Alignment:
| Q |
4 |
tttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtc |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||| ||| ||||||||||||||||||||||| |
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| T |
27069811 |
tttaaggctcttgctcttgacctccacacataacctgcaagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtc |
27069910 |
T |
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| Q |
104 |
ttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtccat |
203 |
Q |
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| T |
27069911 |
ttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacagattttctgtccat |
27070010 |
T |
|
| Q |
204 |
ggggcattgtggaaatggttgtgtagttattgat |
237 |
Q |
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||| ||||||||||| |||||| ||| ||||||| |
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| T |
27070011 |
gggacattgtggaaaaggttgtatagctattgat |
27070044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27085864 - 27086100
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27085864 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
27085963 |
T |
|
| Q |
101 |
gtcttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
200 |
Q |
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| T |
27085964 |
gtcttcttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtc |
27086063 |
T |
|
| Q |
201 |
catggggcattgtggaaatggttgtgtagttattgat |
237 |
Q |
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|||||| ||||||||||| | |||| ||| ||||||| |
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| T |
27086064 |
catgggacattgtggaaaagtttgtatagctattgat |
27086100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27041386 - 27041622
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||| |
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| T |
27041386 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcattttttcatttttattcatcaaactcaatttaa |
27041485 |
T |
|
| Q |
101 |
gtcttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
200 |
Q |
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||| ||||||| |||| ||||||||||||||||||| || ||||| || ||||||| |||||| ||||||||||||| || ||||||||||| ||| |
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| T |
27041486 |
gtcctgttatcatttcaccctctactttaaaacaatattgtttaattatcgtagtattattttgatttacaaagggtgaaagtgaaacagattctcggtc |
27041585 |
T |
|
| Q |
201 |
catggggcattgtggaaatggttgtgtagttattgat |
237 |
Q |
| |
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|||||| ||||||||||| |||| | ||| ||||||| |
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| T |
27041586 |
catgggacattgtggaaaaggttttatagctattgat |
27041622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27098530 - 27098766
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| |||||||||| |
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| T |
27098530 |
agttttaaggctcttgctcttgatctccaaacataacctgcaattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaa |
27098629 |
T |
|
| Q |
101 |
gtcttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
200 |
Q |
| |
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| ||||||||| |||| || || | |||||||||| ||||| |||| | ||| || ||||||||| ||| |||||||||||||||||||| ||| |
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| T |
27098630 |
gccttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacagattccttgtt |
27098729 |
T |
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| Q |
201 |
catggggcattgtggaaatggttgtgtagttattgat |
237 |
Q |
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||| |||| || ||||||||||||| |||||||||| |
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| T |
27098730 |
catagggctttctggaaatggttgttcagttattgat |
27098766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 27105529 - 27105765
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || |||| ||||||||||||||||||| |
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| T |
27105529 |
agttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaa |
27105628 |
T |
|
| Q |
101 |
gtcttgttatcgtttcgccctctactttaaaacaattatgcttaataatttcagtattaggttgattcacaaagggtgaaaatgcaacagattctctgtc |
200 |
Q |
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| T |
27105629 |
gctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacagattccttgtt |
27105728 |
T |
|
| Q |
201 |
catggggcattgtggaaatggttgtgtagttattgat |
237 |
Q |
| |
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||| |||| || ||||||||||||| ||||||||||| |
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| T |
27105729 |
catagggctttctggaaatggttgtttagttattgat |
27105765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27056699 - 27056790
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctta-tattttcattttcattcatcaaact |
92 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| | |||||||||| |||||||||||| |
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| T |
27056699 |
agttttaaggctcttgctcttgacctctacacataacctgcaagtac-tcaaaagttgtgaaccttatttttttcatttttattcatcaaact |
27056790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27045799 - 27045834
Alignment:
| Q |
1 |
agttttaaggctcttgctcttgacctccacacataa |
36 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
27045799 |
agttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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