View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_31 (Length: 246)
Name: NF19062_low_31
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 8000562 - 8000783
Alignment:
| Q |
18 |
tatatagcatgggcagcccttgcctttaaagtctaaggttgagttaggcccaacccaaaaatttaagacattagtaatccataattagttatatttgatt |
117 |
Q |
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| T |
8000562 |
tatatagcatgggcagcccttgcctttaaagtctaaggttgagttaggctcaacccaaaaatttaagacattaataatccataattagttatatttgatt |
8000661 |
T |
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| Q |
118 |
tcatgtttcagcatgtagcattcattataatgattaccagagttctttatcctttatttctgaaaaacattcttatgttgtttttgaactttgtattgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8000662 |
tcatgtttcagcatgtagcattcattataatgatcaccagagttctttatcctttatttctgaaaaacgttcttatgttgtttttgaactttgtattgat |
8000761 |
T |
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| Q |
218 |
aaggtagcgtgtcacacatgcc |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
8000762 |
aaggtagcgtgtcacacatgcc |
8000783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 7907888 - 7907791
Alignment:
| Q |
32 |
agcccttgcctttaaagtctaaggttgagttaggcccaacccaaaaatttaagacattagtaatccataattagttatatttgatttcatgtttcagca |
130 |
Q |
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| T |
7907888 |
agcccttgcctttaaagtctaagattgacttaggctcaacccaaaaatttaagacatta-taatccataattagttatatatgatttcatgtttcagca |
7907791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 51515761 - 51515872
Alignment:
| Q |
18 |
tatatagcatgggcagcccttgcctttaaagtctaaggttgagttaggcccaacccaaaaatttaagacattagtaatccataattagttatatttgatt |
117 |
Q |
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| T |
51515761 |
tatatagcatgggcagccctcgctttaaaagtcgaaggttgagttaggctcaacccaaagatttaagacatca-tactccatcactagttatatatgatt |
51515859 |
T |
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| Q |
118 |
tcatgtttcagca |
130 |
Q |
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| T |
51515860 |
tcatgtttcagca |
51515872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 7907739 - 7907701
Alignment:
| Q |
155 |
cagagttctttatcctttatttctgaaaaacattcttat |
193 |
Q |
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| T |
7907739 |
cagagttctttatcctttatttatgaaaaacattcttat |
7907701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 51515921 - 51515959
Alignment:
| Q |
155 |
cagagttctttatcctttatttctgaaaaacattcttat |
193 |
Q |
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| T |
51515921 |
cagaattctttatcctttatttttgaaaaacattcttat |
51515959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 45031185 - 45031149
Alignment:
| Q |
51 |
taaggttgagttaggcccaacccaaaaatttaagaca |
87 |
Q |
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| T |
45031185 |
taaggttgagttaggcccaacccaaaattttaagaca |
45031149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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