View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_34 (Length: 235)
Name: NF19062_low_34
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 2923354 - 2923560
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2923354 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaaaggaaaattagtgaccatc |
2923453 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacctattcttccacatctg |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2923454 |
cctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacccattcttccacatctg |
2923553 |
T |
|
| Q |
219 |
tgctcct |
225 |
Q |
| |
|
| ||||| |
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|
| T |
2923554 |
ttctcct |
2923560 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 37798208 - 37798414
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
37798208 |
aagtatcccttggttccatttattatccaagagaattgtctccctagatgaggcaaggacaaaatctgcttgaataatgaaagggaaattagtgaccatc |
37798307 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacctattcttccacatctg |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||||||| |
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| T |
37798308 |
tctgtaggaagaaatgcatagacccctggtgagcttttacccctatgaagcctctcctgatttgggaaggccagtgtcacaacccattcttcaacatctg |
37798407 |
T |
|
| Q |
219 |
tgctcct |
225 |
Q |
| |
|
| ||||| |
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|
| T |
37798408 |
ttctcct |
37798414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 153
Target Start/End: Complemental strand, 3010047 - 3009920
Alignment:
| Q |
26 |
ccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatctctgtag |
125 |
Q |
| |
|
||||| ||||| |||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3010047 |
ccttgattccacttatcatcaaagagaattgtctcccttgacgaggcaagaacaaaatctgcttgaattatgaatggaaaattagtgaccatctctgtag |
3009948 |
T |
|
| Q |
126 |
gaagaaaggcatagacccctggtgagct |
153 |
Q |
| |
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||||||| ||||| ||||||||| |||| |
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|
| T |
3009947 |
gaagaaatgcataaacccctggtaagct |
3009920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 2949354 - 2949549
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
| |
|
|||||| |||| ||||| |||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
2949354 |
aagtatccctttattccacttatcatccaagagaattgtctcccttgacgaggcaagaacaaaatctgcctgaattatgaatggaaaattagtgaccatc |
2949453 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacctattcttccaca |
214 |
Q |
| |
|
|||||||||||||| || | ||||||||| |||| || | | ||||| |||||||| | ||||||||| | ||||||||| | ||||||||| |
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|
| T |
2949454 |
tctgtaggaagaaatgcgaaaacccctggtaagctcttatccttgtgaagcctctcctggtgagggaaggccaatgtcacaacacactcttccaca |
2949549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 2932701 - 2932835
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
| |
|
|||||| ||||| ||||| |||| || ||| |||||||| |||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||| |||||| |
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|
| T |
2932701 |
aagtatcccttgattccacttatcattcaatagaattgtttcccttgacgaggcaagaacaaaatctgcttgaattatgaagggaaagttagtaaccatc |
2932800 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagct |
153 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||| |
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|
| T |
2932801 |
tctgtaggaagaaatgcataaacccctggagagct |
2932835 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 28026905 - 28027105
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
28026905 |
aagtatcccttggttccatttattatccaagagaattgtctcccttgatgaagcaaggacaaaatcggcttgaataatgaaaggaaaattagtgaccatc |
28027004 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacctattcttccacatctg |
218 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||| || || ||||| ||||||||||| || ||||| |||||||||||| ||||||||||||||| |
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|
| T |
28027005 |
tctgtaggcagaaatgcatagacccccggtgagcttttacccctgtgaagcctctcctgatttggcaaggcgagtgtcacaacccattcttccacatctg |
28027104 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
|
|
| T |
28027105 |
t |
28027105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 1504363 - 1504180
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccatc |
118 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| | |||||||||||||||||| ||||||| ||||||||| ||||| ||||| ||||||||||||||||| |
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|
| T |
1504363 |
aagtatcccttgattccacttattatccaacataattgtctcccttgatgaagcaaggaaaaaatctgcctgaattatgaaaggaaaattagtgaccatt |
1504264 |
T |
|
| Q |
119 |
tctgtaggaagaaaggcatagacccctggtgagcttttgcctctatgaagtctctcctgattagggaaggctagtgtcacaacc |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||| || | || || || | ||| ||||||||||| ||||| || | |||||||||| |
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|
| T |
1504263 |
tctgtaggaagaaatgcatagacccctggcaaggtctttcccctgtaaagcctctcctgatttgggaatgccaatgtcacaacc |
1504180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 4914149 - 4914051
Alignment:
| Q |
19 |
aagtattccttggttccatttattatccaagagaattgtctcccttgatgaggcaaggacaaaatctgcttgaataatgaatggaaaattagtgaccat |
117 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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|
| T |
4914149 |
aagtatcccttgattccacttattatccaagagaattgtctcccttgatgaggcaaggacaaaatcagcttgaattatgaaaggaaaattagtgaccat |
4914051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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