View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_4 (Length: 566)
Name: NF19062_low_4
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 557
Target Start/End: Complemental strand, 27780534 - 27779995
Alignment:
| Q |
15 |
aaaaacaaatcgaacttttcatttcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaat |
114 |
Q |
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| T |
27780534 |
aaaaacaaatccaacttataatttcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaat |
27780435 |
T |
|
| Q |
115 |
aaacaagaattaaaccaatcaatgtaaccattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcaca |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27780434 |
aaacaagaattaaaccaatcaatgtaactattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcaca |
27780335 |
T |
|
| Q |
215 |
attgtagcaaagttgtgtttgttcattgctccatttcatgcaatccatgtcttcatttgtgttaattgggctaatccaatatgttgggttcacaaatgtg |
314 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27780334 |
attatagcaaagttgtgtttgttcattgctccatttcatgcaatccatgtcttcatttgtgttaattgggctaatccaatatgttgggttcacaaatgtg |
27780235 |
T |
|
| Q |
315 |
taaccacattttgttggtggtttgcaacaacctgactgcatgatgagatatgaaagtacaaaagaagtt--nnnnnnnnnnnnnnggaaagggaataaag |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27780234 |
taaccacattttgttggtggtttgcaacaacctgactgc---atgagatatgaaagtacaaaagaagttaaaaaaaaaaaaaaaaggaaagggaataaag |
27780138 |
T |
|
| Q |
413 |
ggttaaagatgaataaaatattttggggaaaagaatatgtactaacatatggggtgaagaatattgggtcaacnnnnnnnnattgtatacaataaatcgg |
512 |
Q |
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| T |
27780137 |
ggttaaagatgaataatatattttggggaaaagaatatgtactaacatatggggtggagaatatagggtgaac-tttttgtattg-atacaatatatctg |
27780040 |
T |
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| Q |
513 |
agttcttaggattaattaataattagtggttgctttaagaataat |
557 |
Q |
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| T |
27780039 |
agttcttaggattaattaataattagtggttgtttaaagaataat |
27779995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 38 - 340
Target Start/End: Complemental strand, 12641069 - 12640767
Alignment:
| Q |
38 |
tcaagtgtagccttgcttgtatttgcgaaatagctcctcagttttggcattcctaaaagcaaaacacccaaacaaataaacaagaattaaaccaatcaat |
137 |
Q |
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||||||||||||||| ||||| || ||||| || ||||||||||||||||||||||||||||| || |||| ||||||||| | ||||||| | | | |
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| T |
12641069 |
tcaagtgtagccttgtttgtacttacgaaagagatcctcagttttggcattcctaaaagcaaagcatccaatcaaataaaccacaattaaaacgacaaca |
12640970 |
T |
|
| Q |
138 |
gtaaccattaatatcacattggctttcctccattctatcctaatagttgctaacaaaccagctttgcatgagtcacaattgtagcaaagttgtgtttgtt |
237 |
Q |
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|| | || ||||||||||| ||| | ||||||| |||||| | |||| ||||||||||| |||||||||||||| ||||| |||||| |||||| | |
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| T |
12640969 |
gtgatgatcaatatcacattagctcttttccattccttcctaagatttgccaacaaaccagccttgcatgagtcacagttgtaacaaagtgttgtttggt |
12640870 |
T |
|
| Q |
238 |
cattgctccatttcatgcaatccatgtcttcatttgtgttaattgggctaatccaatatgttgggttcacaaatgtgtaaccacattttgttggtggttt |
337 |
Q |
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| T |
12640869 |
cgttgctccattgaagacaatccatgtcagctgcattgtttattggactaatccaatatgttgggttcacaaatgtgtatgcacattgtgttggtggttt |
12640770 |
T |
|
| Q |
338 |
gca |
340 |
Q |
| |
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||| |
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| T |
12640769 |
gca |
12640767 |
T |
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Back To:
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