View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_5 (Length: 520)
Name: NF19062_low_5
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 4195795 - 4195291
Alignment:
| Q |
1 |
aaaggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccaccattcaatgcttataccagcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195795 |
aaaggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccaccattcaatgcttataccagcaa |
4195696 |
T |
|
| Q |
101 |
gaacattaccagaaagaatctgcataaactgattccatttccggttaaccataacctgataatgaccagaatcatgaccaatccaaccactttgaatcca |
200 |
Q |
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| T |
4195695 |
gaacattaccagaaagaatctgcataaactgattccatttccggttaaccataacctgataatgaccagaatcatgaccaatccaaccactttgaatcca |
4195596 |
T |
|
| Q |
201 |
aagaagacccattaatcctccagaaagcacgtgcacaaccgcgctatcacaaaacaaaacaccataaacactgacaaagaacataacagaaataatggac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195595 |
aagaagacccattaatcctccagaaagcacgtgcacaaccgcgctatcacaaaacaaaacaccataaacactgacaaagaacataacagaaataatggac |
4195496 |
T |
|
| Q |
301 |
agtaaaactaaaacaccgtgtcctttctcttcgaacaaacccagtttggttagttcggagaaaagggcacgatagtcacgtgagacgtcagagacgacgt |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195495 |
agtaaaagtaaaacaccgtgtcctttctcttcgaacaaacccagtttggttagttcggagaaaagggcacgatagtcacgtgagacgtcagagacgacgt |
4195396 |
T |
|
| Q |
401 |
agtcacgtaggtaactgccagtggcaaagttttggaggtgtttgtaagcggatggagggtggaaagcgaggaatgcatcggtgacatcttggccggcgag |
500 |
Q |
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| T |
4195395 |
agtcacgtaggtaactgccagtggcaaagttttggaggtgtttgtaagcggatggagggtggaaagcgaggaatgcatcggtgacatcttggccggcgag |
4195296 |
T |
|
| Q |
501 |
gttga |
505 |
Q |
| |
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||||| |
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| T |
4195295 |
gttga |
4195291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 4 - 276
Target Start/End: Complemental strand, 4186760 - 4186488
Alignment:
| Q |
4 |
ggtaaatgttgaagatcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccaccattcaatgcttataccagcaagaa |
103 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| || |||||||||| || ||||| |
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| T |
4186760 |
ggtaaatgttgaaggtcagggtcaaaatcaagactattacaagcaaggtggtgtgcattgtggttccatttccaccactccatgcttatactagaaagaa |
4186661 |
T |
|
| Q |
104 |
cattaccagaaagaatctgcataaactgattccatttccggttaaccataacctgataatgaccagaatcatgaccaatccaaccactttgaatcca-aa |
202 |
Q |
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||| |||||||| ||||| | |||| ||||| || | ||| |||||| |||||| |||| ||||||||||| ||||||||||||||||||||| || |
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| T |
4186660 |
aatttccagaaaggatctgaacaaaccagttccaattacagttcgccataatctgatagtgacaagaatcatgactaatccaaccactttgaatccacaa |
4186561 |
T |
|
| Q |
203 |
gaagacccattaatcctccagaaagcacgtgcacaaccgcgctatcacaaaacaaaacaccataaacactgaca |
276 |
Q |
| |
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||| ||||||||| || ||| || |||| |||| || |||||| |||||||||||||| ||||||||||| |
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| T |
4186560 |
gaa-acccattaacccaccacaacacacgcacacacacgaactatcagaaaacaaaacaccacaaacactgaca |
4186488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 24417348 - 24417427
Alignment:
| Q |
18 |
atcaggatcaaaatcaagactattacaagcaagatggtgtgcattatgattccatttccaccattcaatgcttataccag |
97 |
Q |
| |
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|||||||||| ||||||||||||| ||||||| ||| || ||||||||| ||||||||||||| |||| |||||||||| |
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| T |
24417348 |
atcaggatcataatcaagactattgcaagcaatatgatgagcattatgagtccatttccaccaagcaatacttataccag |
24417427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 24417480 - 24417512
Alignment:
| Q |
150 |
cataacctgataatgaccagaatcatgaccaat |
182 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
24417480 |
cataacctcataatgaccagaatcatgaccaat |
24417512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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