View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19062_low_8 (Length: 485)
Name: NF19062_low_8
Description: NF19062
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19062_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 468
Target Start/End: Complemental strand, 27870734 - 27870279
Alignment:
| Q |
11 |
cacagacacaaggattagaagaaaataaaaaccactttgtcaaacaatcaattgagtgcatgtttggtatcacagtagttttgccaaaatcaaggtgagc |
110 |
Q |
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| T |
27870734 |
cacagacacaaggattagaagaaaataaaaaccactttgtcaaacaatcaattgagtgcatgtttggtatcacagtagttttgccaaaatcaaggtgagc |
27870635 |
T |
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| Q |
111 |
caccataattttgcaaacccaccgtgataccaaacatgcactaactattactatgatacaaataaaacacctattcttattgagccttttcaacttcttg |
210 |
Q |
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| T |
27870634 |
caccataattttgcaaacccaccgtgataccaaacatgcactaactattactatgatacaaataaaacacctatttttattgagccttttcaacttcttg |
27870535 |
T |
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| Q |
211 |
tcttctccacgtttcttgaaaaacgcatgcgctccgttagatcgagcgttcttcaactcctcaaatgttacatcagccagctccttcattatctcctcct |
310 |
Q |
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| T |
27870534 |
tcttctccacgtttcttgaaaaacgcatgcgctccgttagatcgagtgttcttcaactcctcaaatgttacatcagccagctccttcattatctcctcct |
27870435 |
T |
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| Q |
311 |
cctcctacaataatcaaaatcaataataatacaaacttactataacatggttagnnnnnnnnattaaaaagtatataacatgatgannnnnnngaagtta |
410 |
Q |
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| T |
27870434 |
cctcctacaataatcaaaatcaataataatacaaactcactataacatggttag--ttttttattaaaaagtatataacatgatgatttttttgaagtta |
27870337 |
T |
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| Q |
411 |
ctcacatcatctgatatgctagaagaagacattgactcgtcaatatcactctccttgt |
468 |
Q |
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| T |
27870336 |
ctcacatcatctgatatgctagaagaagacattgactcgtcaatatcactctccttgt |
27870279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 179 - 330
Target Start/End: Complemental strand, 24029913 - 24029759
Alignment:
| Q |
179 |
acctattcttattgagccttttcaacttcttgtcttctccacgtttcttgaaaaacgcatgcgctccgttagatcgagcgttcttcaactcctcaaatgt |
278 |
Q |
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||||||||||||| ||||||||||||||| |||||| || ||||||||||||| |||||||| || || ||||| || |||| || ||||||||||| |
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| T |
24029913 |
acctattcttattagcccttttcaacttcttatcttctgcaggtttcttgaaaaatgcatgcgccccattcgatcgtgctttctgcagttcctcaaatgt |
24029814 |
T |
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| Q |
279 |
tacatcagccagctccttcattatc---tcctcctcctcctacaataatcaaaat |
330 |
Q |
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| T |
24029813 |
tacatcagctagctctttctctatctcttcttcttcctcctacaatcatcaaaat |
24029759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 11134370 - 11134341
Alignment:
| Q |
123 |
gcaaacccaccgtgataccaaacatgcact |
152 |
Q |
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| T |
11134370 |
gcaaacccaccgtgataccaaacatgcact |
11134341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 38729434 - 38729372
Alignment:
| Q |
65 |
agtgcatgtttggtatcacagtagttttgccaaaatcaaggtgagccaccataattttgcaaa |
127 |
Q |
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| T |
38729434 |
agtgcatgtttggtatcatagtcgatttgccgaaatcatggtgagccaccatgattttgcaaa |
38729372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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