View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_high_13 (Length: 382)
Name: NF19063_high_13
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 88 - 366
Target Start/End: Complemental strand, 11532067 - 11531789
Alignment:
| Q |
88 |
ttgtataaaaaatgaacttacaattggtagcgagtgacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatata |
187 |
Q |
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| T |
11532067 |
ttgtataaaaaatgaacttacaattggtagcgagcgacaatttgaattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatata |
11531968 |
T |
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| Q |
188 |
ccacctccaccaacagtcaatttgttaacatatctaaaatttatccaatcaccattcttaaatgaatatggatcacttggagctttcaataatccttcaa |
287 |
Q |
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| T |
11531967 |
ccacctccaccaacagttaatttgttaacatatctaaaatttatccaatcaccattcttaaatgaatatggatcacttggagctttcaatagtccttcaa |
11531868 |
T |
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| Q |
288 |
tatgaaagtccatccaagcattgcatggaccactaaatacaacttccttaagcatatatgtcccttgtgggatgaaaac |
366 |
Q |
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| T |
11531867 |
tatgaaagttcatccaagcattgcatggaccactaaatacaacttccttaagcatatatgtcccttgtgggatcaaaac |
11531789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 11532161 - 11532104
Alignment:
| Q |
13 |
aatatatcaaattttaatgaacaattagaaacgaagattagcctgctaaaaaatgtaa |
70 |
Q |
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| T |
11532161 |
aatatataaaattttaatgaacaattaggaacgaagattagcctgctaaaaaatgtaa |
11532104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 162 - 356
Target Start/End: Original strand, 50495920 - 50496114
Alignment:
| Q |
162 |
cagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacatatctaaaatttatccaatcaccattcttaaatgaatatggatc |
261 |
Q |
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| T |
50495920 |
cagaagatccttgaccatccaatgtgccacctccaccaacagttaatttgttaacatatctaaaatttatccaattattagttgcaaatgaatctggatt |
50496019 |
T |
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| Q |
262 |
acttggagctttcaataatccttcaatatgaaagtccatccaagcattgcatggaccactaaatacaacttccttaagcatatatgtcccttgtg |
356 |
Q |
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| T |
50496020 |
acttagagccttcaataatcattcaattataaaatttatctaagcattacatggaccactgaagttaacatccttaagcatatatgtcccttgtg |
50496114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 287
Target Start/End: Complemental strand, 13615144 - 13614979
Alignment:
| Q |
122 |
tgacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacatatc |
221 |
Q |
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| T |
13615144 |
tgacaatttgggttctttttgcaatcattcactttccaagcataagctccttgagcatccaatgatcctcctccaccaaccattaacttgttaacatgtt |
13615045 |
T |
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| Q |
222 |
taaaatttatccaatcaccattcttaaatgaatatggatcacttggagctttcaataatccttcaa |
287 |
Q |
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| T |
13615044 |
tgaaattgatccaattatcactggaaaatgattttggatcaattggagccttcaaaagtccttcaa |
13614979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 287
Target Start/End: Complemental strand, 26300479 - 26300315
Alignment:
| Q |
123 |
gacaatttggattctttttgcaatcgttagttttccaagcagaagatccttgaccatacaatataccacctccaccaacagtcaatttgttaacatatct |
222 |
Q |
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|||||||||| ||||||| ||||| || ||||||||||| ||| ||||||| ||| |||| |||||||||||||| | || |||||||||||| | |
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| T |
26300479 |
gacaatttgggttcttttgacaatcattcattttccaagcataagctccttgagcatccaatgatccacctccaccaaccattaacttgttaacatattt |
26300380 |
T |
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| Q |
223 |
aaaatttatccaatcaccattcttaaatgaatatggatcacttggagctttcaataatccttcaa |
287 |
Q |
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| T |
26300379 |
gaaattgatccaattatcactagcaaatgattttggatcaattggagccttcaaaagtccttcaa |
26300315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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