View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_high_22 (Length: 255)

Name: NF19063_high_22
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_high_22
NF19063_high_22
[»] chr6 (4 HSPs)
chr6 (1-237)||(17454792-17455032)
chr6 (51-237)||(17433742-17433932)
chr6 (1-30)||(22574864-22574893)
chr6 (1-29)||(9435621-9435649)
[»] chr8 (3 HSPs)
chr8 (1-31)||(1937303-1937333)
chr8 (1-30)||(38745326-38745355)
chr8 (1-29)||(21548552-21548580)
[»] chr4 (4 HSPs)
chr4 (1-31)||(45126125-45126155)
chr4 (152-234)||(38243228-38243314)
chr4 (183-215)||(38220416-38220448)
chr4 (1-29)||(43596890-43596918)
[»] chr1 (3 HSPs)
chr1 (1-31)||(6438111-6438141)
chr1 (1-31)||(14760796-14760826)
chr1 (1-30)||(18216900-18216929)
[»] chr2 (1 HSPs)
chr2 (1-30)||(33228980-33229009)
[»] chr7 (1 HSPs)
chr7 (1-29)||(19753015-19753043)
[»] chr5 (4 HSPs)
chr5 (1-29)||(2848208-2848236)
chr5 (1-29)||(4417732-4417760)
chr5 (1-29)||(16971617-16971645)
chr5 (1-29)||(27765252-27765280)
[»] chr3 (3 HSPs)
chr3 (1-29)||(19550501-19550529)
chr3 (1-33)||(30555274-30555306)
chr3 (1-29)||(40192151-40192179)


Alignment Details
Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 17454792 - 17455032
Alignment:
Q  1 taccaactgagctaagctcacggggatacaactggtgttatgttttaatgtgaaagtgagattgaaataaattataaatactgattcctcgta----aga 96  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||    |||    
T  17454792 taccaactgagataagctcacggggatacaactggtgttatggtttaatgtgaaagtgagattgaaataaattataaatattgactacttgtagtctaga 17454891  T
Q  97 gactatacgttcacccaatcaacgtatcaatgactgtgagatcaagttcagacgatcctagatttcaaactcggtatttcggatttaaaaacaatcaaaa 196  Q
    |||| |||||||||||||||||| ||||||||||| | |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  17454892 gactttacgttcacccaatcaacatatcaatgactattagatcaagttcagacgattctagattccaaactcggtattttggatttaaaaacaatcaaaa 17454991  T
Q  197 tttgtatattttgtgaactctccggttttgatccaacaatc 237  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  17454992 tttgtatattttgtgaactttccggttttgatccaacaatc 17455032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 17433742 - 17433932
Alignment:
Q  51 tgaaagtgagattgaaataaattataaatactgattcctcgta----agagactatacgttcacccaatcaacgtatcaatgactgtgagatcaagttca 146  Q
    ||||||||||||||||| |||||||||||  |||||||| |||    |||||||||| ||||||||||||||| |||||||||| || ||||||||||||    
T  17433742 tgaaagtgagattgaaacaaattataaatgttgattccttgtagtatagagactatatgttcacccaatcaacatatcaatgaccgttagatcaagttca 17433841  T
Q  147 gacgatcctagatttcaaactcggtatttcggatttaaaaacaatcaaaatttgtatattttgtgaactctccggttttgatccaacaatc 237  Q
    ||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||| |||| ||| || ||||||||||||||||    
T  17433842 gacaatcctagattccaaactcggtattttggatttaaaaacaatcaaaatatgtgtattttatgaattcttcgattttgatccaacaatc 17433932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 22574893 - 22574864
Alignment:
Q  1 taccaactgagctaagctcacggggataca 30  Q
    ||||||||||||||||||||||||||||||    
T  22574893 taccaactgagctaagctcacggggataca 22574864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9435649 - 9435621
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  9435649 taccaactgagctaagctcacggggatac 9435621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 1937333 - 1937303
Alignment:
Q  1 taccaactgagctaagctcacggggatacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  1937333 taccaactgagctaagctcacggggatacaa 1937303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 38745326 - 38745355
Alignment:
Q  1 taccaactgagctaagctcacggggataca 30  Q
    ||||||||||||||||||||||||||||||    
T  38745326 taccaactgagctaagctcacggggataca 38745355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21548552 - 21548580
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  21548552 taccaactgagctaagctcacggggatac 21548580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 45126155 - 45126125
Alignment:
Q  1 taccaactgagctaagctcacggggatacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  45126155 taccaactgagctaagctcacggggatacaa 45126125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 234
Target Start/End: Original strand, 38243228 - 38243314
Alignment:
Q  152 tcctagatttcaaactcggtatttcggatt----taaaaacaatcaaaatttgtatattttgtgaactctccggttttgatccaaca 234  Q
    ||||||||||||| |||||||||| |||||    | |||| |||||| ||| ||||||||||||||||  | ||| |||||||||||    
T  38243228 tcctagatttcaagctcggtattttggattttaatcaaaataatcaatattcgtatattttgtgaactgactggtcttgatccaaca 38243314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 38220416 - 38220448
Alignment:
Q  183 aaaaacaatcaaaatttgtatattttgtgaact 215  Q
    ||||| |||||||||||||||||||||||||||    
T  38220416 aaaaaaaatcaaaatttgtatattttgtgaact 38220448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43596918 - 43596890
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  43596918 taccaactgagctaagctcacggggatac 43596890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6438111 - 6438141
Alignment:
Q  1 taccaactgagctaagctcacggggatacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  6438111 taccaactgagctaagctcacggggatacaa 6438141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 14760796 - 14760826
Alignment:
Q  1 taccaactgagctaagctcacggggatacaa 31  Q
    |||||||||||||||||||||||||||||||    
T  14760796 taccaactgagctaagctcacggggatacaa 14760826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 18216929 - 18216900
Alignment:
Q  1 taccaactgagctaagctcacggggataca 30  Q
    ||||||||||||||||||||||||||||||    
T  18216929 taccaactgagctaagctcacggggataca 18216900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33228980 - 33229009
Alignment:
Q  1 taccaactgagctaagctcacggggataca 30  Q
    ||||||||||||||||||||||||||||||    
T  33228980 taccaactgagctaagctcacggggataca 33229009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19753015 - 19753043
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  19753015 taccaactgagctaagctcacggggatac 19753043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2848236 - 2848208
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  2848236 taccaactgagctaagctcacggggatac 2848208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4417732 - 4417760
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  4417732 taccaactgagctaagctcacggggatac 4417760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16971645 - 16971617
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  16971645 taccaactgagctaagctcacggggatac 16971617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 27765280 - 27765252
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  27765280 taccaactgagctaagctcacggggatac 27765252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19550529 - 19550501
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  19550529 taccaactgagctaagctcacggggatac 19550501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30555274 - 30555306
Alignment:
Q  1 taccaactgagctaagctcacggggatacaact 33  Q
    |||||||||||||||||||||||||||| ||||    
T  30555274 taccaactgagctaagctcacggggataaaact 30555306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40192179 - 40192151
Alignment:
Q  1 taccaactgagctaagctcacggggatac 29  Q
    |||||||||||||||||||||||||||||    
T  40192179 taccaactgagctaagctcacggggatac 40192151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University