View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19063_high_25 (Length: 242)
Name: NF19063_high_25
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_high_25 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 242
Target Start/End: Complemental strand, 48942827 - 48942597
Alignment:
| Q |
22 |
aaggccgcttccgcctaagccggtgacgatttgatgaacctttttcccaccaaaaaccaccattatcgtttccgtctgaagtttcggtagtgactagtga |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48942827 |
aaggccgcttccgcctaagccggtgacgatttgatgaacctttttcccaccgaaaaccaccattatcgtttccgtctgaagtttcggtagtgactagtga |
48942728 |
T |
|
| Q |
122 |
ag----------tttgagcttggaacagagaaatgagaatgaggaaaaataaaaatcagagtaaaaacgacggcgttttgtgagtgaagagcatgggtga |
211 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48942727 |
agggaagtgaagtttgagcttgaaacagagaaatgagaatgaggaaaaataaaaatcagagtaaaaacgacggcgttttgtgagtgaagagcatgggtga |
48942628 |
T |
|
| Q |
212 |
cacgtgttaatttgtgtgtgtagatagataa |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48942627 |
cacgtgttaatttgtgtgtgtagatagataa |
48942597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University