View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_high_6 (Length: 463)
Name: NF19063_high_6
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 24620668 - 24621101
Alignment:
| Q |
19 |
actcttaacaacttccttaagccattttctcatagctgcttcttgagtttcaattgagatggtttgaaggtcatcaagagtcttattgaccagaatttgg |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620668 |
actcttaacaacttccttaaaccattttctcatagctgcttcttgagtttcaattgagatggtttgaaggtcatcaagagtcttattgaccagaatttgg |
24620767 |
T |
|
| Q |
119 |
ggttatgtgtcttatcaaggtcatcaagagtcttatcaacttgcctggtcagtgtctattgttgcaagagctgctaagatgctgcagaatttggggttat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24620768 |
ggttatgtgtcttatcaaggtcatcaagagtcttatcaactagcctggttagtgtctattgttgcaagagctgctaagatgctgcagaatttggggttat |
24620867 |
T |
|
| Q |
219 |
gttttggtgcatcagctttggtcccttagccttgttccagccctgcgtcctaaggtactaagcgagtaagctttaggttaagtttggtattgctcaaata |
318 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24620868 |
gttttggtgcatcagttttggtcccttagccttgttccagccctgcgtcctaaggtactaagcgagtaagctttaggttaagcttggtattgctcaaata |
24620967 |
T |
|
| Q |
319 |
tacgcttaatcatatttattttttctagttttgatcatgtcttctgaacttgtcccgtggtgtttgattcttggctacactcctgcctttgagcaactaa |
418 |
Q |
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| T |
24620968 |
tacgcttaatcatatttattttttctagtttagatcatgtcttctgaacttgtcccctggtgtttgattcttggctacactcctgcctttgagcaactaa |
24621067 |
T |
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| Q |
419 |
gcttttcattgtttaattctatatacaacttcat |
452 |
Q |
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| T |
24621068 |
gcttttcattgtttaattctatatacaacttcat |
24621101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 179 - 452
Target Start/End: Original strand, 24652944 - 24653220
Alignment:
| Q |
179 |
gttgcaagagctgctaagatgctgcagaatttggggttatgttttggtgcatcagctttggtcccttagccttgttccagccctgcgtcctaaggtacta |
278 |
Q |
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||||||||||||||||||||| || |||||| ||||||||| ||||| |||||||||||||||| ||||||| |||| |||| ||| ||||||| ||||| |
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| T |
24652944 |
gttgcaagagctgctaagatgttgtagaattcggggttatgatttggcgcatcagctttggtcc-ttagcctcgttctagccatgcatcctaagatacta |
24653042 |
T |
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| Q |
279 |
agcgagtaagctttaggttaagtttggtattgctcaaatatacgcttaatcatatttattt---tttctagttttgatcatgtcttctgaacttg-tccc |
374 |
Q |
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| T |
24653043 |
agcgagtgagcttcaggttaagcttggtaatgctcaaatatacgttgaatcataattttttatttttctagtttagatcatgtctcctaaacttggttcc |
24653142 |
T |
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| Q |
375 |
gtggtgtttgattcttggctacactcctgcctttgagcaactaagcttttcattgtttaattctatatacaacttcat |
452 |
Q |
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| T |
24653143 |
ctggtgtttgattcttggctacactccttcctttgagcaactaagcttttcatagtttaattatatatacaacttcat |
24653220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 161 - 335
Target Start/End: Original strand, 24613306 - 24613480
Alignment:
| Q |
161 |
gcctggtcagtgtctattgttgcaagagctgctaagatgctgcagaatttggg-gttatgttttggtgcatcagctttggtcccttagccttgttccagc |
259 |
Q |
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||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
24613306 |
gcctggtcagtttctgttgctgcaagagctgctaagatgctgcagaatttgggtgttatgttttggtgcatcagctttggtcc-ttagcctcgttccagc |
24613404 |
T |
|
| Q |
260 |
cctgcgtcctaaggtactaagcgagtaagctttaggttaagtttggtattgctcaaatatacgcttaatcatattt |
335 |
Q |
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| T |
24613405 |
cctgtgtcctaaggtactaagcgagtgagcttcaggttaagcttggtaatgctcaaatatacgctaaatcatattt |
24613480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 24614161 - 24614237
Alignment:
| Q |
376 |
tggtgtttgattcttggctacactcctgcctttgagcaactaagcttttcattgtttaattctatatacaacttcat |
452 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||| |||||| |||||||| |
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| T |
24614161 |
tggtgtttgattcttggctacaatcctgcctttgagctactaagcttttgatcgtttaattttatatataacttcat |
24614237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 370
Target Start/End: Original strand, 24613498 - 24613530
Alignment:
| Q |
338 |
tttttctagttttgatcatgtcttctgaacttg |
370 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
24613498 |
tttttctagtttagatcatgtcttctgaacttg |
24613530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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