View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_1 (Length: 894)
Name: NF19063_low_1
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-160; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 131 - 522
Target Start/End: Original strand, 11814897 - 11815288
Alignment:
| Q |
131 |
acgttggaaaatacaaatgtgtagtatgtttgcaacttttgcaagccaaatgtttattatatagatataaaatacagttatagatctttatttaggcgtt |
230 |
Q |
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| T |
11814897 |
acgttggaaaataaacttgtgtagtatctttgtaacttttgcaagccaaatgtttattatat-gatataaaatacagttatagatttttatttaggcgtt |
11814995 |
T |
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| Q |
231 |
tgtcggggtaggttcctgcccccatatttgccnnnnnnnnnnnnnncagaatccc-aaagcaaacgaaaacaatgtaaacaaaatatataattaataagg |
329 |
Q |
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| T |
11814996 |
tctcagggtagtttcctgcccccatatttgccaaaaaagaaaaaaacagaatccccaaagcaaacgaaaacaatctaaataaaatatataattaataagg |
11815095 |
T |
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| Q |
330 |
tctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataactatccagtacttcagatct |
429 |
Q |
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| T |
11815096 |
tctctcgttgtaatatataagaagcagcactttaattccaatcaagaggcttcgaaactttagtactttaattgcaataactatccagtacttcagatct |
11815195 |
T |
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| Q |
430 |
ttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagcctgtacaaaa |
522 |
Q |
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| T |
11815196 |
ttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattctggattcactatctcaagcctgtacaaaa |
11815288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 701 - 880
Target Start/End: Original strand, 11815814 - 11815994
Alignment:
| Q |
701 |
cgagagctcacttgtaattattaaggaaataatgtagaaatatggatatttcaattttagccaagtcacttccaggacagtgcctacttcctgctccaaa |
800 |
Q |
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| T |
11815814 |
cgagagctcacttgtaattattaaggaaataatgtagaaaaatggatatttcaattttagccaagtcactcccaggacagtgcctacttcctgctccaaa |
11815913 |
T |
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| Q |
801 |
aggaaggaatgttccaactttagcattgtgattctgcacatatgaaaataaaacactaatat--acaagtacttttgtttgt |
880 |
Q |
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| T |
11815914 |
aggaaggaatgttccaactttagcattgtgattctgcacatatgaaaa-aaaacactaatatacacaagtacttttgtttgt |
11815994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 428 - 537
Target Start/End: Original strand, 11826067 - 11826176
Alignment:
| Q |
428 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggattcactatctcaagcctgtacaaaatagat |
527 |
Q |
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| T |
11826067 |
ctttatcaccttagcaaggcaattgtctttgggctttggtgatggtaagctagtaataggacaatctggatttactcgatcaagcctacacgaaatagat |
11826166 |
T |
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| Q |
528 |
gaattagtaa |
537 |
Q |
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| T |
11826167 |
aaattagtaa |
11826176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 723 - 841
Target Start/End: Original strand, 11799983 - 11800101
Alignment:
| Q |
723 |
aaggaaataatgtagaaatatggatatttcaattttagccaagtcacttccaggacagtgcctacttcctgctccaaaaggaaggaatgttccaacttta |
822 |
Q |
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| T |
11799983 |
aaggaaataatgtagaaatacaaaaatttcaggttttgccaagtcactcgcaggacaatgcatacttcctgctccaaaaggaataaaggttccaactttt |
11800082 |
T |
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| Q |
823 |
gcattgtgattctgcacat |
841 |
Q |
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| T |
11800083 |
gctttgtgatcctgaacat |
11800101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 541 - 607
Target Start/End: Original strand, 11815285 - 11815347
Alignment:
| Q |
541 |
aaaaattgagcttgatttcaaactaattaattcttttctatgaaattaatttaacagcaaaagttaa |
607 |
Q |
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| T |
11815285 |
aaaaattgagcttgatttcaaactaatt----cctttctatgaaattaatttaacagcaaaaattaa |
11815347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 428 - 499
Target Start/End: Original strand, 11799285 - 11799356
Alignment:
| Q |
428 |
ctttatcaccctagcaaggcaattgtctatgggctttgatgatggtaagcaagtcataggacattttggatt |
499 |
Q |
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| T |
11799285 |
ctttatcaccttggaaaggcaattgtctataggcttggataatggtaagcaagtaatagggcattctggatt |
11799356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 724 - 815
Target Start/End: Complemental strand, 37436125 - 37436034
Alignment:
| Q |
724 |
aggaaataatgtagaaatatggatatttcaattttagccaagtcacttccaggacagtgcctacttcctgctccaaaaggaaggaatgttcc |
815 |
Q |
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| T |
37436125 |
aggaaataatgaagaaatatagaaatttcaagttttgctaagtcggctccaggacagagcctacttcctgctccaaaaggaagaaaggttcc |
37436034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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