View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_11 (Length: 402)
Name: NF19063_low_11
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 381
Target Start/End: Complemental strand, 52170816 - 52170450
Alignment:
| Q |
15 |
cacagaggtccgagtaagtagctgaagaaggatcaacaagggtgtataaaactgatgaattatcactacagtcaacactgtgaaacgtattcggtagagt |
114 |
Q |
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| T |
52170816 |
cacagaggtccgagtaagtagctgtagaaggatcaacaagggtgtataaaactgatgaattatcactacattcaacactgtgaaacgtattcggtagagt |
52170717 |
T |
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| Q |
115 |
ttcagttgtaagaaggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaactgctattgaatgtgatgttgtcgacaggaaca |
214 |
Q |
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| T |
52170716 |
ttcagttgtaagaaggcaatagtaaaacaaagtcacgttagcgacatcatcataaagtttaaacaaagtgctattgaatgtgatgttgtcgacaggaaca |
52170617 |
T |
|
| Q |
215 |
caaacatcatctctcgagtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccattg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52170616 |
caaacatcatctctcgagtaatcttccctagtaactctgagcttctgtgttgaattgtcccattcaagaatactgtatttcaagaaagaatcatccgttg |
52170517 |
T |
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| Q |
315 |
ttaacttggggacactgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactt |
381 |
Q |
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| T |
52170516 |
ttaacttggggacactgtcctcacatgtgagttccatattaggatcatcattcacaccgcaatactt |
52170450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 31610369 - 31610416
Alignment:
| Q |
247 |
aactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
294 |
Q |
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| T |
31610369 |
aactctgagtctctgtgttgtattgtcccattcaagaatacggtattt |
31610416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 31621194 - 31621257
Alignment:
| Q |
231 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
294 |
Q |
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||||||| || |||| ||| ||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
31621194 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31621257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 31636189 - 31636252
Alignment:
| Q |
231 |
agtaatcttccctagtaactctgagtttctgtgttgaattgtcccattcaagaatactgtattt |
294 |
Q |
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| T |
31636189 |
agtaatcgtctctagcgactgtgagtttctgtgttgtattgtcccattcaagaatacggtattt |
31636252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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