View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_12 (Length: 398)

Name: NF19063_low_12
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_12
NF19063_low_12
[»] chr3 (21 HSPs)
chr3 (261-398)||(44406864-44407001)
chr3 (261-398)||(47481146-47481283)
chr3 (280-365)||(45501232-45501317)
chr3 (285-365)||(50305406-50305486)
chr3 (286-380)||(8652841-8652935)
chr3 (293-365)||(11267624-11267696)
chr3 (261-361)||(35458853-35458953)
chr3 (282-361)||(8653662-8653741)
chr3 (279-369)||(46740499-46740589)
chr3 (285-368)||(43104466-43104550)
chr3 (294-369)||(38742108-38742183)
chr3 (294-369)||(46721892-46721967)
chr3 (315-369)||(8427276-8427330)
chr3 (261-303)||(43768032-43768074)
chr3 (262-324)||(45297556-45297618)
chr3 (284-326)||(52399005-52399047)
chr3 (280-357)||(3971848-3971925)
chr3 (280-357)||(3997953-3998030)
chr3 (319-379)||(42146864-42146924)
chr3 (316-368)||(44385164-44385216)
chr3 (319-379)||(51492380-51492440)
[»] chr1 (23 HSPs)
chr1 (18-159)||(27397876-27398017)
chr1 (261-398)||(29334220-29334356)
chr1 (184-250)||(27398061-27398127)
chr1 (261-331)||(43316363-43316433)
chr1 (261-321)||(40028764-40028824)
chr1 (279-369)||(45064710-45064800)
chr1 (261-361)||(50950151-50950251)
chr1 (282-365)||(27418190-27418274)
chr1 (280-368)||(31788211-31788299)
chr1 (319-379)||(15374023-15374083)
chr1 (313-365)||(50267620-50267672)
chr1 (313-380)||(27420215-27420282)
chr1 (320-379)||(46358532-46358591)
chr1 (261-347)||(34717497-34717583)
chr1 (262-307)||(30780980-30781025)
chr1 (316-368)||(4530843-4530895)
chr1 (282-326)||(4640555-4640599)
chr1 (285-365)||(13361633-13361713)
chr1 (280-368)||(14925277-14925365)
chr1 (262-310)||(30466189-30466237)
chr1 (262-302)||(34716431-34716471)
chr1 (262-322)||(38931321-38931381)
chr1 (293-369)||(49610744-49610820)
[»] chr7 (13 HSPs)
chr7 (261-398)||(30402757-30402895)
chr7 (279-398)||(30915758-30915877)
chr7 (261-398)||(5004842-5004979)
chr7 (338-398)||(1484581-1484641)
chr7 (279-369)||(29315245-29315335)
chr7 (319-379)||(9379718-9379778)
chr7 (284-364)||(40905724-40905804)
chr7 (279-331)||(41224133-41224185)
chr7 (285-368)||(20900465-20900548)
chr7 (284-358)||(12732276-12732350)
chr7 (316-361)||(24321487-24321532)
chr7 (261-321)||(12732822-12732882)
chr7 (316-368)||(37693494-37693546)
[»] chr5 (9 HSPs)
chr5 (261-398)||(18152676-18152812)
chr5 (279-369)||(16970967-16971057)
chr5 (285-360)||(6353714-6353789)
chr5 (293-369)||(8226680-8226756)
chr5 (261-323)||(32943523-32943585)
chr5 (261-303)||(1970514-1970556)
chr5 (315-369)||(3958106-3958160)
chr5 (287-361)||(33283197-33283271)
chr5 (257-301)||(4874586-4874630)
[»] chr4 (16 HSPs)
chr4 (297-398)||(20350380-20350481)
chr4 (262-321)||(17512188-17512247)
chr4 (262-350)||(23383317-23383405)
chr4 (279-369)||(31634753-31634843)
chr4 (294-367)||(43079199-43079272)
chr4 (262-324)||(33370854-33370916)
chr4 (255-309)||(54453559-54453613)
chr4 (280-321)||(232031-232072)
chr4 (289-350)||(53290189-53290250)
chr4 (261-323)||(33369915-33369977)
chr4 (279-321)||(33409419-33409461)
chr4 (262-303)||(39429937-39429978)
chr4 (284-368)||(6680277-6680361)
chr4 (269-357)||(21166321-21166409)
chr4 (269-357)||(31836406-31836494)
chr4 (284-364)||(34956313-34956393)
[»] chr2 (13 HSPs)
chr2 (262-380)||(36390964-36391082)
chr2 (294-364)||(9370997-9371067)
chr2 (279-369)||(16427221-16427311)
chr2 (261-365)||(7868079-7868183)
chr2 (280-369)||(4976439-4976528)
chr2 (280-369)||(4994346-4994435)
chr2 (262-347)||(42370906-42370991)
chr2 (280-361)||(14573286-14573367)
chr2 (313-365)||(16043431-16043483)
chr2 (285-321)||(19521371-19521407)
chr2 (280-328)||(36391647-36391695)
chr2 (313-357)||(38834445-38834489)
chr2 (313-357)||(38834582-38834626)
[»] chr8 (10 HSPs)
chr8 (285-369)||(30272890-30272974)
chr8 (285-369)||(36936631-36936715)
chr8 (289-369)||(41092737-41092817)
chr8 (280-380)||(40450902-40451009)
chr8 (285-369)||(36936352-36936436)
chr8 (284-368)||(1487606-1487690)
chr8 (262-369)||(43972020-43972127)
chr8 (262-303)||(42346105-42346146)
chr8 (293-361)||(10501855-10501922)
chr8 (261-303)||(42345400-42345442)
[»] scaffold2003 (2 HSPs)
scaffold2003 (280-365)||(469-554)
scaffold2003 (261-385)||(596-722)
[»] scaffold0189 (1 HSPs)
scaffold0189 (280-368)||(12794-12882)
[»] scaffold0180 (2 HSPs)
scaffold0180 (285-369)||(22172-22256)
scaffold0180 (261-368)||(23026-23134)
[»] scaffold0041 (2 HSPs)
scaffold0041 (284-364)||(44214-44294)
scaffold0041 (280-361)||(27246-27327)
[»] scaffold0016 (1 HSPs)
scaffold0016 (319-379)||(67913-67973)
[»] chr6 (2 HSPs)
chr6 (262-385)||(29290130-29290254)
chr6 (280-357)||(33018192-33018269)
[»] scaffold0129 (1 HSPs)
scaffold0129 (280-318)||(43203-43241)
[»] scaffold1956 (1 HSPs)
scaffold1956 (313-365)||(1084-1136)
[»] scaffold0154 (1 HSPs)
scaffold0154 (313-365)||(27439-27491)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 44407001 - 44406864
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44407001 atttagcatgggaatagatagttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctttcaacact 44406902  T
Q  361 atatttttccccactatctttcatcaccattctctctc 398  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44406901 atatttttccccactatctttcatcaccattctctctc 44406864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 47481283 - 47481146
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    ||||||||||||||||||||||||||| | | ||| | ||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  47481283 atttagcatgagaatggatagttgttttctaccatagaaaagtaaattttatccattagatcaaataaagaccatacttttatcatattctctcaacact 47481184  T
Q  361 atatttttccccactatctttcatcaccattctctctc 398  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  47481183 atatttttccccagtatctttcatcaccattctctctc 47481146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 45501317 - 45501232
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    |||||||| ||| ||||||||||||||||| | ||||| ||||||||||||| || | ||| ||| |||||||| |||||||||||    
T  45501317 agttgttttccaccatgggaaagtaaatttaaaccattggatcaaatgaagaacacattttaatcctactctctaaacactatatt 45501232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 365
Target Start/End: Complemental strand, 50305486 - 50305406
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||| ||||| ||||||||||||| |||||||||  |||||||| |||||| |||||||||||  | |||||||||||    
T  50305486 tttcccaccatggaaaagtaaattttaaccattagattgaatgaagagcatactcttatcatactccatgaacactatatt 50305406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 8652841 - 8652935
Alignment:
Q  286 ttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatctt 380  Q
    |||||| ||||||||||||||||||  ||||| ||| |||||| || || | ||| ||| |||||||||||||||| |||||||| || ||||||    
T  8652841 ttcccaccatgggaaagtaaattttcaccatttgattaaatgaggaacacattttaatcctactctctcaacactagatttttccacattatctt 8652935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 11267696 - 11267624
Alignment:
Q  293 catgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||||| ||||||||| ||||||||| |||| |||| |||||| |||||||||||  ||| |||||||||    
T  11267696 catgggaaaataaattttaaccattagattaaataaagagcatactcttatcatactccatcaccactatatt 11267624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 35458853 - 35458953
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||| ||| |||||||||||||||||||| ||| ||||||||||||| | ||||| ||| |||| |||| ||   | |||||||||||  ||||||||    
T  35458853 atttagaatgggaatggatagttgtttcccaccataggaaagtaaatttaatccatttgattaaataaagaacactttcttatcatactccttcaacact 35458952  T
Q  361 a 361  Q
    |    
T  35458953 a 35458953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 282 - 361
Target Start/End: Complemental strand, 8653741 - 8653662
Alignment:
Q  282 ttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    |||||||||| |||| |||||||||||||| ||||| ||||||||||  | || ||| |||||||| || ||||||||||    
T  8653741 ttgtttcccaccatgagaaagtaaattttaaccatttgatcaaatgagaaacacactcttatcatattccctcaacacta 8653662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 46740589 - 46740499
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||||||| ||||||||||||| |||||  |||| ||| ||||||| | || ||| ||||||||||| ||||||| || |||||||    
T  46740589 tagttttttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattagatttttc 46740499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 368
Target Start/End: Complemental strand, 43104550 - 43104466
Alignment:
Q  285 tttcccatcatgggaaagtaaat-tttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||||||||||||||||   | |||| |||||||||||||| || |  ||| ||||||||||||||||| |||||| ||||||    
T  43104550 tttcccatcatgggaaagttggtatttaaccattagatcaaatcaataaaataattttatcatactctctccacactagattttt 43104466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 38742183 - 38742108
Alignment:
Q  294 atgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    |||| ||||||| ||||| || |||||||||||| ||| |||||| ||||||| ||| ||||| |||| |||||||    
T  38742183 atggaaaagtaagttttaacctttagatcaaatggagaacatactcttatcatgctccctcaatactagatttttc 38742108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 369
Target Start/End: Complemental strand, 46721967 - 46721892
Alignment:
Q  294 atgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    |||||||||||| ||||| || ||| || ||||| ||| |||||||||||||| ||| ||||| |||| |||||||    
T  46721967 atgggaaagtaagttttaacctttaaattaaatggagaacatacttttatcatgctccctcaatactagatttttc 46721892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Original strand, 8427276 - 8427330
Alignment:
Q  315 attagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||| ||||||||| |||| | ||||||| |||||||||||||| |||||||    
T  8427276 attagattaaatgaagaacatattcttatcatgctctctcaacactagatttttc 8427330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 43768032 - 43768074
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagt 303  Q
    |||||||||| ||||||| |||||||||||| |||||||||||    
T  43768032 atttagcatgggaatggagagttgtttcccaccatgggaaagt 43768074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 45297556 - 45297618
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaa 324  Q
    ||||| ||| ||| ||| ||||||||||||||||||||||||   ||||| ||||||||||||    
T  45297556 tttagtatgggaaaggagagttgtttcccatcatgggaaagttttttttaaccattagatcaa 45297618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 52399047 - 52399005
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaat 326  Q
    |||||||||||||||||||||||||||  ||||||||| ||||    
T  52399047 gtttcccatcatgggaaagtaaattttgaccattagattaaat 52399005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Complemental strand, 3971925 - 3971848
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    |||| |||||||| ||||||||||  ||  || ||||||||| |||||| || |||| || |||||||||||||||||    
T  3971925 agttctttcccatgatgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaac 3971848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 3997953 - 3998030
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    |||| |||||||| ||||||||||  ||  || ||||||||| |||||| || |||| || |||||||||||||||||    
T  3997953 agttctttcccatgatgggaaagttgatcatatccattagattaaatgaggaacatatttctatcatactctctcaac 3998030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 42146864 - 42146924
Alignment:
Q  319 gatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    |||||||||||||  ||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  42146864 gatcaaatgaagagtatagttttatcatagtctctcaccactagattttttcacactatct 42146924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 44385216 - 44385164
Alignment:
Q  316 ttagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    ||||||||||||||||||||| |||||| |||  |||||| ||||| ||||||    
T  44385216 ttagatcaaatgaagaccatagttttattatagactctcaccactagattttt 44385164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 51492440 - 51492380
Alignment:
Q  319 gatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    |||||||||||||  ||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  51492440 gatcaaatgaagagtatagttttatcatagtctctcaccactagattttttcacactatct 51492380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 27397876 - 27398017
Alignment:
Q  18 taatgacctctatcaaatcacaaattattcaatagaatatgagttcgattcatgcgatgaaacttttttaaccagttttatttaccttctaatgaaatat 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||    
T  27397876 taatgacctctatcaaatcacaaattattcaatagaatataagttcgattcataggatgaaacttttttaaccagttttatttaccttctaatgaaacat 27397975  T
Q  118 tggattattaacgttcccttcccctgaaaacatagagttaac 159  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  27397976 tggattattaacgttcccttccccttaaaacatagagttaac 27398017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 261 - 398
Target Start/End: Original strand, 29334220 - 29334356
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||    
T  29334220 atttagcatgggaatggatagttgtttcccaccatgggaaagtaaattttacccattagatcaaataaagaccatacttttatcatattctctcagcact 29334319  T
Q  361 atatttttccccactatctttcatcaccattctctctc 398  Q
    ||| ||||||||||||||||||| ||||||||||||||    
T  29334320 ata-ttttccccactatctttcaacaccattctctctc 29334356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 27398061 - 27398127
Alignment:
Q  184 tgtgcattgaagcaaacaatttgaaatttacttctctcatcttacgagacaatttccaccgtatatt 250  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27398061 tgtgcattgaagcaaacaatttgaaatttacttctctcgtcttacgagacaatttccaccgtatatt 27398127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 331
Target Start/End: Original strand, 43316363 - 43316433
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaaga 331  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| |||||||| ||||    
T  43316363 atttagcatgggaatggatagttgtttcccaccatgggaaagtaaattttatccatttgatcaaataaaga 43316433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 40028824 - 40028764
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagat 321  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||    
T  40028824 atttagcatgagaatggatagttgtttcccaccataggaaagtaaattttatccattagat 40028764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Original strand, 45064710 - 45064800
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||| ||| ||||  ||||| ||||||||||| |||||||||  |||||||    
T  45064710 tagttttttcccatcatgggaaagtaagttttaaccattagatctaattaagaatatactcttatcatactccctcaacactcaatttttc 45064800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 361
Target Start/End: Original strand, 50950151 - 50950251
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    ||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||||| | | |||| |||| ||   |||||||||||||  ||||||||    
T  50950151 atttagcatggaaatggatagttgtttcccaccatggaaaagtaaattttatccatttggttaaataaagaacacttttttatcatactccttcaacact 50950250  T
Q  361 a 361  Q
    |    
T  50950251 a 50950251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 282 - 365
Target Start/End: Original strand, 27418190 - 27418274
Alignment:
Q  282 ttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctc-aacactatatt 365  Q
    |||||||||| ||||  ||||||| ||||| ||||||||||||||||||| || ||| || | |||||||||| |||||||||||    
T  27418190 ttgtttcccaccatgaaaaagtaatttttaaccattagatcaaatgaagagcacactcttgttatactctctcgaacactatatt 27418274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 31788299 - 31788211
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||||||||| ||||||||||| ||||||| ||||||||| ||||  ||| |||||||||| ||||  | |||||||| | ||||||    
T  31788299 agttgtttcccaccatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccagattttt 31788211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Original strand, 15374023 - 15374083
Alignment:
Q  319 gatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  15374023 gatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 15374083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 50267620 - 50267672
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    |||||||||||||||||||| ||| | |||||||| |||||| ||||||||||    
T  50267620 ccattagatcaaatgaagactatattcttatcatattctctccacactatatt 50267672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 27420282 - 27420215
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatctt 380  Q
    |||||||||||||||| || || | ||| |||||||||||| ||||||| |||||| | |||||||||    
T  27420282 ccattagatcaaatgaggaacacattttaatcatactctctaaacactagattttttcacactatctt 27420215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 46358591 - 46358532
Alignment:
Q  320 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  46358591 atcaaatgaagagcatagttttatcatagtctctcaccactaaattttttcacactatct 46358532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 34717583 - 34717497
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcata 347  Q
    ||||| |||| || |||| ||||||||| ||  ||||||||||| |||| | |||||||||||| | |||| |||| ||||||||||    
T  34717583 atttatcatgggagtggagagttgtttctcactatgggaaagtagatttgaaccattagatcaactaaagaacatatttttatcata 34717497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 307
Target Start/End: Complemental strand, 30781025 - 30780980
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaat 307  Q
    |||| |||| ||| ||| ||||||||||||||||||||||||||||    
T  30781025 tttaacatgggaaaggagagttgtttcccatcatgggaaagtaaat 30780980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 4530895 - 4530843
Alignment:
Q  316 ttagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    ||||||||||||||||||||| |||||| |||  |||||| ||||| ||||||    
T  4530895 ttagatcaaatgaagaccatatttttattatagactctcaccactagattttt 4530843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 4640555 - 4640599
Alignment:
Q  282 ttgtttcccatcatgggaaagtaaattttacccattagatcaaat 326  Q
    |||||||||| ||||||||||||| ||| | ||||||||||||||    
T  4640555 ttgtttcccaccatgggaaagtaattttcaaccattagatcaaat 4640599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 365
Target Start/End: Original strand, 13361633 - 13361713
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||| ||||||||||| ||||| | |||  ||||||| | |||| || || ||||||||  |||||||||||||||||    
T  13361633 tttcccaccatgggaaagttaatttgaaccaccagatcaagtaaagaacacacatttatcatggtctctcaacactatatt 13361713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 14925365 - 14925277
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||||||||| ||||||||||  ||||||  ||||||||| || |  ||| |||||||||||||||  | |||||||| | ||||||    
T  14925365 agttgtttcccaccatgggaaagctaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccagattttt 14925277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 30466189 - 30466237
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaatttt 310  Q
    ||||||||| ||||||  |||||||||||| |||||||||||| |||||    
T  30466189 tttagcatgggaatggggagttgtttcccaccatgggaaagtagatttt 30466237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 302
Target Start/End: Original strand, 34716431 - 34716471
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaag 302  Q
    ||||||||| ||||||| |||||||||||||||||| ||||    
T  34716431 tttagcatgggaatggagagttgtttcccatcatggaaaag 34716471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 38931321 - 38931381
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatc 322  Q
    ||||||||||||| ||  | |||||||||| ||||||||||| ||||| | ||||||||||    
T  38931321 tttagcatgagaaaggggaattgtttcccaccatgggaaagtcaatttgaaccattagatc 38931381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 49610744 - 49610820
Alignment:
Q  293 catgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||| ||||| || |||||| ||||| | | |||||| ||||||| ||| ||||| |||| |||||||    
T  49610744 catgggaaagtaagttttaacctttagattaaatggataacatactcttatcatgctccctcaatactagatttttc 49610820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 30402895 - 30402757
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30402895 atttagcatgagaatggatagttattttccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 30402796  T
Q  361 atattttt-ccccactatctttcatcaccattctctctc 398  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  30402795 atatttttcccccactatctttcatcaccattctctctc 30402757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 279 - 398
Target Start/End: Original strand, 30915758 - 30915877
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatc 378  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30915758 tagttgtttcccaccatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatc 30915857  T
Q  379 tttcatcaccattctctctc 398  Q
    ||||||||||||||||||||    
T  30915858 tttcatcaccattctctctc 30915877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 398
Target Start/End: Complemental strand, 5004979 - 5004842
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||||||  |||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||| | |||| ||| |||||||||||||    
T  5004979 atttagcataggaatggatagttgtttcccaccaagggaaagtaaattttacctattagatcaaatgaagaacattcctttaacatgctctctcaacact 5004880  T
Q  361 atatttttccccactatctttcatcaccattctctctc 398  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  5004879 atatttttctccactatcttttatcaccattctctctc 5004842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 338 - 398
Target Start/End: Complemental strand, 1484641 - 1484581
Alignment:
Q  338 ttttatcatactctctcaacactatatttttccccactatctttcatcaccattctctctc 398  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1484641 ttttatcatactctctcaacactatatttttccccactatctttcatcaccattctctctc 1484581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 29315335 - 29315245
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||  | ||| ||||||||||| |||||||||  |||||||    
T  29315335 tagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccctcaacactcaatttttc 29315245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 9379778 - 9379718
Alignment:
Q  319 gatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  9379778 gatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 9379718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Complemental strand, 40905804 - 40905724
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatat 364  Q
    ||||||||| || ||||||| ||||||  || ||||||||||| |||| || | ||||||||||  |||||||||||||||    
T  40905804 gtttcccattataggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacactatat 40905724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 41224133 - 41224185
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaaga 331  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||| ||||||||    
T  41224133 tagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaaga 41224185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 20900465 - 20900548
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||||||||||||||||  || ||  || ||||||||||| |||| || | |||||| |||||||||| |||||| ||||||    
T  20900465 tttcccatcatgggaaagtttatattgacctttagatcaaatcaagaacacatttttataatactctctccacactaaattttt 20900548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 12732276 - 12732350
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaaca 358  Q
    |||||||| ||||||||||||||| ||  |||||||||||  | |||| |||| ||||||||||  |||||||||    
T  12732276 gtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 24321487 - 24321532
Alignment:
Q  316 ttagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    ||||||||||||| || |||| |||||||||||||||||| |||||    
T  24321487 ttagatcaaatgaggaacatatttttatcatactctctcatcacta 24321532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 12732882 - 12732822
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagat 321  Q
    ||||||||||  |||||| | | |||||||| |||| |||||||||||||| |||||||||    
T  12732882 atttagcatggaaatggacaatagtttcccaccatgagaaagtaaattttatccattagat 12732822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 37693546 - 37693494
Alignment:
Q  316 ttagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    ||||||||||||||||||||| |||||| |||  |||||| ||||| ||||||    
T  37693546 ttagatcaaatgaagaccatagttttattatagactctcaccactagattttt 37693494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 261 - 398
Target Start/End: Original strand, 18152676 - 18152812
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||||| | ||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  18152676 atttagcacgggaatggatagttgtttcccactatgagaaagtaaattttacccattagatcaaatgaagaccatacttttatcattctctct-aacact 18152774  T
Q  361 atatttttccccactatctttcatcaccattctctctc 398  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18152775 atatttttccccactatctttcatcaccattctctctc 18152812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 16971057 - 16970967
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||  | ||| ||||||||||| |||||||||  |||||||    
T  16971057 tagttttttcccatcatgggaaagtaagttttaaccattagatctaatgaagaatacactcttatcatactccctcaacactcaatttttc 16970967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 285 - 360
Target Start/End: Original strand, 6353714 - 6353789
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||| | || ||||||||||||||| |||| ||||    
T  6353714 tttcccatcataggaaagtaaattttaaccattagatgaaatgaaaaacacacttttatcatactccctcagcact 6353789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 8226680 - 8226756
Alignment:
Q  293 catgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||||||||||||| || |||||| ||||| ||| |||||| ||||||| ||| ||||| ||||||||||||    
T  8226680 catggaaaagtaaattttaacctttagattaaatggagaacatactcttatcatgctccctcaatactatatttttc 8226756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 32943523 - 32943585
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatca 323  Q
    |||||||||| ||| ||||| |||||||||| ||||||||||| ||| ||| |||||||||||    
T  32943523 atttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagatca 32943585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Complemental strand, 1970556 - 1970514
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagt 303  Q
    |||||||||| ||||||| |||||||||||| |||||||||||    
T  1970556 atttagcatgggaatggagagttgtttcccaccatgggaaagt 1970514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 369
Target Start/End: Complemental strand, 3958160 - 3958106
Alignment:
Q  315 attagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||| || |||||| |||| ||||| |||||||||||||||||| |||||||    
T  3958160 attagattaagtgaagaacatatttttaacatactctctcaacactaaatttttc 3958106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 33283197 - 33283271
Alignment:
Q  287 tcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    ||||||||||||||||    ||||  |||||||||||||||| || || | |||||||||||||||||| |||||    
T  33283197 tcccatcatgggaaaggtttttttgaccattagatcaaatgaggaacacatttttatcatactctctcatcacta 33283271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 301
Target Start/End: Original strand, 4874586 - 4874630
Alignment:
Q  257 tggaatttagcatgagaatggatagttgtttcccatcatgggaaa 301  Q
    |||||||||||||| ||||||| | ||||||||||| ||||||||    
T  4874586 tggaatttagcatgggaatggaaaattgtttcccatgatgggaaa 4874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 20350380 - 20350481
Alignment:
Q  297 ggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatctttcatcaccattctctc 396  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20350380 ggaaagtaaattttacccattaaatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatctttcatcaccattctctc 20350479  T
Q  397 tc 398  Q
    ||    
T  20350480 tc 20350481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 17512247 - 17512188
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17512247 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagat 17512188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 350
Target Start/End: Original strand, 23383317 - 23383405
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactc 350  Q
    ||||| ||||||| ||| |||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| || ||| |||||||||||    
T  23383317 tttagaatgagaaaggagagttgtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaacacactcttatcatactc 23383405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 31634843 - 31634753
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||| ||||||||| ||||||| ||||| |||||||||| ||||||||  ||||| ||||||||||| |||||||||  |||||||    
T  31634843 tagtttttttccatcatggaaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctcaacactcaatttttc 31634753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 43079199 - 43079272
Alignment:
Q  294 atgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttt 367  Q
    |||||||||| ||||||| |||||||||||| | |||| |||| | ||||||| | ||||||||||||||||||    
T  43079199 atgggaaagttaattttatccattagatcaagtaaagaacatagtcttatcatgcactctcaacactatatttt 43079272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 262 - 324
Target Start/End: Complemental strand, 33370916 - 33370854
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaa 324  Q
    ||||||||| ||| ||||| |||||||||| ||||||||||| ||| ||| ||||||||||||    
T  33370916 tttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaa 33370854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 309
Target Start/End: Complemental strand, 54453613 - 54453559
Alignment:
Q  255 gatggaatttagcatgagaatggatagttgtttcccatcatgggaaagtaaattt 309  Q
    ||||| |||||| ||| ||||| |||||||||||||| |||||||||||||||||    
T  54453613 gatggcatttagaatgggaatgaatagttgtttcccaccatgggaaagtaaattt 54453559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 232072 - 232031
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagat 321  Q
    |||||||||||| ||||||||||||||||||| |||||||||    
T  232072 agttgtttcccaccatgggaaagtaaattttaaccattagat 232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 53290250 - 53290189
Alignment:
Q  289 ccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactc 350  Q
    ||||||||||||||||| ||||| |||||||||  ||||||||  | |||||||||||||||    
T  53290250 ccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactc 53290189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 33369915 - 33369977
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatca 323  Q
    |||||||||| |||  |||| |||||||||| ||||||||||| ||| ||| |||||||||||    
T  33369915 atttagcatgggaaatgatatttgtttcccaccatgggaaagttaatgttagccattagatca 33369977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 321
Target Start/End: Complemental strand, 33409461 - 33409419
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagat 321  Q
    ||||||||||||| ||| ||||||||||||||| |||||||||    
T  33409461 tagttgtttcccaccataggaaagtaaattttatccattagat 33409419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 39429978 - 39429937
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagt 303  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  39429978 tttagcatgggaatggagagttgtttcccaccatgggaaagt 39429937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 6680361 - 6680277
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    ||||| || ||||||||||||||| ||  ||||||||| || | |||| |||| ||||||||||   ||||||||||| ||||||    
T  6680361 gtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacactagattttt 6680277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 21166409 - 21166321
Alignment:
Q  269 tgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    |||||| ||| |||| |||||||||||||||||||  ||  |  ||||||||| |||||| || |||| |  |||||||||||||||||    
T  21166409 tgagaaaggagagttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacatattcctatcatactctctcaac 21166321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 31836494 - 31836406
Alignment:
Q  269 tgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    |||||| ||| |||| ||||||| |||||||||||  ||  |  ||||||||| |||||| || |||| || |||||||||||||||||    
T  31836494 tgagaaaggagagttctttcccaccatgggaaagttgatcatgtccattagattaaatgaggaacatatttctatcatactctctcaac 31836406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 34956313 - 34956393
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatat 364  Q
    ||||||||| || ||||||| ||||||  || ||||||||| | |||| || | ||||||||||  |||||||||||||||    
T  34956313 gtttcccattataggaaagttaattttgacccttagatcaagtaaagaacacatttttatcatagactctcaacactatat 34956393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 380
Target Start/End: Original strand, 36390964 - 36391082
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    ||||||||| ||| ||  |||||||||||| ||||||||||||||||||| |||||||||||||||| || || | ||| ||| || |||||||||||||    
T  36390964 tttagcatgggaaagggaagttgtttcccaccatgggaaagtaaattttaaccattagatcaaatgaggaacacattttaatcctattctctcaacacta 36391063  T
Q  362 tatttttccccactatctt 380  Q
     |||||||| |||||||||    
T  36391064 gatttttccacactatctt 36391082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 9370997 - 9371067
Alignment:
Q  294 atgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatat 364  Q
    |||||||||||||||| | ||||||||| ||||||||| |||||||||||||||| |||||||||||||||    
T  9370997 atgggaaagtaaatttcagccattagattaaatgaagaacatacttttatcatacactctcaacactatat 9371067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 279 - 369
Target Start/End: Complemental strand, 16427311 - 16427221
Alignment:
Q  279 tagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||| ||| ||||||||||||||||| ||||| |||||||||| ||||||||  ||||| ||||||||||| |||||||||  |||||||    
T  16427311 tagtttttttccatcatgggaaagtaagttttaaccattagatctaatgaagaatatactcttatcatactccctcaacactcaatttttc 16427221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 7868183 - 7868079
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacact 360  Q
    |||||||||||||| ||  |||||||||||| ||||||||||||||||||| ||| |||||||||| |||| || |  ||||||||| || || | ||||    
T  7868183 atttagcatgagaaaggggagttgtttcccaccatgggaaagtaaattttaaccactagatcaaataaagagcacatatttatcatagtcccttagcact 7868084  T
Q  361 atatt 365  Q
    |||||    
T  7868083 atatt 7868079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 4976528 - 4976439
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||  |||||||||| ||||||| ||||||||| ||||  ||| |||||||||| ||||  | |||||||| | |||||||    
T  4976528 agttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaatttttc 4976439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 280 - 369
Target Start/End: Complemental strand, 4994435 - 4994346
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||  |||||||||| ||||||| ||||||||| ||||  ||| |||||||||| ||||  | |||||||| | |||||||    
T  4994435 agttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacaccaaatttttc 4994346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 42370991 - 42370906
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcata 347  Q
    ||||| ||| ||||||| |||||||||||| ||||||||||||||| ||  ||||||||| || || |||  ||| ||||||||||    
T  42370991 tttagtatgggaatggaaagttgtttcccaccatgggaaagtaaatattggccattagataaagtggagaatatagttttatcata 42370906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 14573286 - 14573367
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    |||| ||||||| |||||||||||  ||  |  ||||||||| |||||| ||  ||| ||||||||||||||||||||||||    
T  14573286 agttttttcccaccatgggaaagttgatcatgtccattagattaaatgaggaatatatttttatcatactctctcaacacta 14573367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 16043431 - 16043483
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||||||||||||| | || |   ||||||||||||||||||||||||||    
T  16043431 ccattagatcaaatgaaaatcaaaacattatcatactctctcaacactatatt 16043483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Original strand, 19521371 - 19521407
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagat 321  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  19521371 tttcccatcatgggaaagtaaatcttaaccattagat 19521407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 36391695 - 36391647
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatga 328  Q
    |||||||| ||| ||||||||||||||||||| |||||| || ||||||    
T  36391695 agttgttttccaccatgggaaagtaaattttaaccattaaattaaatga 36391647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 38834445 - 38834489
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    ||||||||| |||||| || |||| ||||||||||||||||||||    
T  38834445 ccattagattaaatgaggaacatatttttatcatactctctcaac 38834489  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Complemental strand, 38834626 - 38834582
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    ||||||||| ||||||||| |||| || |||||||||||||||||    
T  38834626 ccattagattaaatgaagaacatatttctatcatactctctcaac 38834582  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 30272974 - 30272890
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||||||||||| ||||| |||||||||  ||||||||  | ||||||||||||||| ||||| |||| |||||||    
T  30272974 tttcccatcatgggaaagtaagttttaaccattagattcaatgaagaatacacttttatcatactccctcaatactagatttttc 30272890  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 36936715 - 36936631
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||||||||||||||||| |||||||||  ||| ||||  | ||||||||||||||| ||||| |||| |||||||    
T  36936715 tttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactccctcaatactagatttttc 36936631  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 369
Target Start/End: Complemental strand, 41092817 - 41092737
Alignment:
Q  289 ccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||||||| ||||| |||||||||| ||||||||  | ||||||||||||||| |||||||||  |||||||    
T  41092817 ccatcatgggaaagtaagttttaaccattagatctaatgaagaatacacttttatcatactccctcaacactcaatttttc 41092737  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 380
Target Start/End: Complemental strand, 40451009 - 40450902
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactc-------tctcaacactatatttttcccc 372  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| || || | ||| ||| || ||       |||||||||||||||||||| |    
T  40451009 agttgtttcccaccatgggaaagtaaattttaaccattagatcaaatgaggaacacattttaatcctattctctcaagtctcaacactatatttttccac 40450910  T
Q  373 actatctt 380  Q
    ||||||||    
T  40450909 actatctt 40450902  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 369
Target Start/End: Complemental strand, 36936436 - 36936352
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||||||||||||||||||||||| |||||||||  ||| ||||  | ||||||||||||||| || || |||| |||||||    
T  36936436 tttcccatcatgggaaagtaaattttaaccattagattcaataaagaatacacttttatcatactcccttaatactagatttttc 36936352  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 284 - 368
Target Start/End: Original strand, 1487606 - 1487690
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||| ||||| |||||||  |||||| |||||| || |||| |||  |||||| ||||||||| |||||||||||||||||||    
T  1487606 gtttcctatcataggaaagttgattttaaccattaaattaaatcaagtacatactattatcatacactctcaacactatattttt 1487690  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 262 - 369
Target Start/End: Complemental strand, 43972127 - 43972020
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    ||||| |||||||||   ||||||||||||  |||||||||| ||||||| ||||||||| ||||  ||| |||||||||| ||||  | |||||||| |    
T  43972127 tttagtatgagaatgagaagttgtttcccactatgggaaagttaattttaaccattagataaaatagagaacatacttttaccatagacactcaacacca 43972028  T
Q  362 tatttttc 369  Q
     |||||||    
T  43972027 gatttttc 43972020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 303
Target Start/End: Complemental strand, 42346146 - 42346105
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagt 303  Q
    ||||||||| ||||||| ||||||||||||||||||||||||    
T  42346146 tttagcatgggaatggagagttgtttcccatcatgggaaagt 42346105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 10501922 - 10501855
Alignment:
Q  293 catgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    ||||||||||||| ||||  ||||| ||||||||||||| ||| || ||||||||||| ||||||||||    
T  10501922 catgggaaagtaatttttgaccattggatcaaatgaagaacatgctcttatcatactc-ctcaacacta 10501855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 303
Target Start/End: Original strand, 42345400 - 42345442
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagt 303  Q
    |||||||||| ||||||| |||||||||||| |||||||||||    
T  42345400 atttagcatgggaatggagagttgtttcccaccatgggaaagt 42345442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 365
Target Start/End: Complemental strand, 554 - 469
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    |||||||||||| ||||| ||||||||||||| ||| |||||||||| |||| || |||||||||||| || |||| || ||||||    
T  554 agttgtttcccaccatggaaaagtaaattttaaccactagatcaaataaagagcacacttttatcatagtccctcagcattatatt 469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 596 - 722
Alignment:
Q  261 atttagcatgagaatggatagttgttt-cccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacac 359  Q
    |||||||||| ||||| | |||||||| |||||  ||||||||| ||| ||| ||||||||| |||| ||||  | ||| |||||||||||  |||||||    
T  596 atttagcatgggaatgaagagttgttttcccattgtgggaaagttaatgttagccattagattaaataaagaatacactcttatcatactccttcaacac 695  T
Q  360 tatatt-tttccccactatctttcatc 385  Q
    || |||  || | ||||||||||||||    
T  696 tagattaatttcacactatctttcatc 722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 12882 - 12794
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatattttt 368  Q
    |||||||||||| ||||||||||| ||||||  ||||||||| || |  ||| |||||||||||||||  | |||||||| || |||||    
T  12882 agttgtttcccaccatgggaaagttaattttgaccattagataaactagagaacatacttttatcatagacactcaacaccattttttt 12794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 369
Target Start/End: Original strand, 22172 - 22256
Alignment:
Q  285 tttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatatttttc 369  Q
    ||||||| ||||||||||||| |||||  |||| ||| ||||||| | || ||| ||||||||||| ||||||| || |||||||    
T  22172 tttcccaccatgggaaagtaagttttaatcattggattaaatgaaaaacacactcttatcatactccctcaacattagatttttc 22256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 23134 - 23026
Alignment:
Q  261 atttagcatgagaatggatagttgtttcccatcatgggaaagtaaatttt-acccattagatcaaatgaagaccatacttttatcatactctctcaacac 359  Q
    ||||||| || |||||  ||||| ||||||||||||||||||| | |||| | ||||||||| ||||   || |||| |||||||||  |||||||||||    
T  23134 atttagcctgggaatgtctagttttttcccatcatgggaaagttagttttgaaccattagattaaatagggaacataattttatcatggtctctcaacac 23035  T
Q  360 tatattttt 368  Q
    || ||||||    
T  23034 taaattttt 23026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 44214 - 44294
Alignment:
Q  284 gtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacactatat 364  Q
    ||||||||| || ||||||| ||||||  || ||||||||||| |||| || | ||||||||||  |||||||||||||||    
T  44214 gtttcccattataggaaagttaattttgacccttagatcaaataaagaacacatttttatcatagactctcaacactatat 44294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 361
Target Start/End: Original strand, 27246 - 27327
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    |||| |||||||||||||||||||  ||  |  ||||||||| |||||| || || | | ||||||||||||||||||||||    
T  27246 agttctttcccatcatgggaaagttgatcatgtccattagattaaatgaggaacacattcttatcatactctctcaacacta 27327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 67973 - 67913
Alignment:
Q  319 gatcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 379  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  67973 gatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 67913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 385
Target Start/End: Original strand, 29290130 - 29290254
Alignment:
Q  262 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaacacta 361  Q
    |||||||||  |||||| |||||||||||| ||||||||||| ||| ||| ||||  ||| |||| ||||  | ||| |||||||||||  |||||||||    
T  29290130 tttagcatggaaatggagagttgtttcccaccatgggaaagttaatgttaaccatgggattaaataaagaatacactcttatcatactccttcaacacta 29290229  T
Q  362 tatt-tttccccactatctttcatc 385  Q
     |||  || | ||||||||||||||    
T  29290230 gattaatttcacactatctttcatc 29290254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 357
Target Start/End: Original strand, 33018192 - 33018269
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccattagatcaaatgaagaccatacttttatcatactctctcaac 357  Q
    |||| ||||||||||| |||||||  ||  |  ||||||||| |||||| || |||| ||||||||||||||||||||    
T  33018192 agttctttcccatcattggaaagttgatcatgtccattagattaaatgaggaacatatttttatcatactctctcaac 33018269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 280 - 318
Target Start/End: Complemental strand, 43241 - 43203
Alignment:
Q  280 agttgtttcccatcatgggaaagtaaattttacccatta 318  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  43241 agttgtttcccatcatgggaaagtaaatcttaaccatta 43203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 1084 - 1136
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||||||||||||| | || |   ||||||||||||||||||||||||||    
T  1084 ccattagatcaaatgaaaatcacaacattatcatactctctcaacactatatt 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 27439 - 27491
Alignment:
Q  313 ccattagatcaaatgaagaccatacttttatcatactctctcaacactatatt 365  Q
    ||||||||||||||||| | || |   ||||||||||||||||||||||||||    
T  27439 ccattagatcaaatgaaaatcacaacattatcatactctctcaacactatatt 27491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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