View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_13 (Length: 386)

Name: NF19063_low_13
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_13
NF19063_low_13
[»] chr1 (12 HSPs)
chr1 (230-386)||(48942358-48942514)
chr1 (70-155)||(14461715-14461800)
chr1 (65-155)||(5559392-5559482)
chr1 (45-155)||(24063911-24064021)
chr1 (59-155)||(41198518-41198614)
chr1 (49-155)||(24614742-24614848)
chr1 (65-155)||(41074902-41074992)
chr1 (52-155)||(7004674-7004777)
chr1 (59-154)||(16902572-16902667)
chr1 (71-154)||(33719615-33719698)
chr1 (94-155)||(28655579-28655640)
chr1 (59-155)||(35672108-35672204)
[»] chr7 (13 HSPs)
chr7 (45-155)||(1575842-1575952)
chr7 (65-155)||(27392590-27392680)
chr7 (46-155)||(323603-323712)
chr7 (65-155)||(28694687-28694777)
chr7 (70-155)||(36482647-36482732)
chr7 (49-155)||(6714212-6714318)
chr7 (46-155)||(10286413-10286515)
chr7 (225-283)||(38984669-38984727)
chr7 (70-153)||(36582535-36582618)
chr7 (65-154)||(31280189-31280278)
chr7 (72-155)||(29988005-29988088)
chr7 (114-154)||(8937854-8937894)
chr7 (52-102)||(48615023-48615073)
[»] chr5 (14 HSPs)
chr5 (45-155)||(40987339-40987449)
chr5 (46-155)||(33160517-33160626)
chr5 (55-155)||(13554767-13554867)
chr5 (49-155)||(1495889-1495995)
chr5 (65-155)||(13521490-13521580)
chr5 (65-155)||(27110654-27110744)
chr5 (70-154)||(41061203-41061287)
chr5 (56-155)||(12291376-12291475)
chr5 (52-147)||(20210050-20210145)
chr5 (49-155)||(35449648-35449753)
chr5 (65-155)||(42716135-42716225)
chr5 (67-155)||(4986180-4986268)
chr5 (53-105)||(25932197-25932249)
chr5 (52-155)||(32765207-32765310)
[»] chr4 (20 HSPs)
chr4 (45-155)||(24575154-24575264)
chr4 (45-155)||(9279924-9280034)
chr4 (46-155)||(47498838-47498947)
chr4 (49-155)||(42414550-42414656)
chr4 (49-155)||(3756962-3757068)
chr4 (45-138)||(7700297-7700390)
chr4 (65-155)||(46251940-46252030)
chr4 (77-155)||(18780958-18781036)
chr4 (65-155)||(42429988-42430078)
chr4 (90-155)||(47997031-47997096)
chr4 (60-155)||(24319041-24319136)
chr4 (64-155)||(56078436-56078527)
chr4 (76-138)||(6184090-6184152)
chr4 (65-155)||(24859007-24859097)
chr4 (65-155)||(34276947-34277037)
chr4 (45-155)||(7611685-7611794)
chr4 (65-154)||(20580592-20580681)
chr4 (94-155)||(37602649-37602710)
chr4 (94-144)||(31568178-31568228)
chr4 (65-138)||(40436458-40436531)
[»] chr8 (16 HSPs)
chr8 (45-155)||(43620036-43620146)
chr8 (45-155)||(26721155-26721265)
chr8 (45-155)||(13470863-13470973)
chr8 (45-138)||(1265121-1265214)
chr8 (65-155)||(31127268-31127358)
chr8 (65-154)||(6345305-6345394)
chr8 (65-154)||(37948952-37949041)
chr8 (46-155)||(4602595-4602704)
chr8 (54-155)||(32906902-32907003)
chr8 (69-155)||(26721289-26721375)
chr8 (49-155)||(4267344-4267450)
chr8 (45-155)||(42200065-42200175)
chr8 (45-154)||(10183231-10183339)
chr8 (65-154)||(3106183-3106272)
chr8 (70-149)||(27808983-27809062)
chr8 (59-155)||(3773821-3773915)
[»] chr6 (6 HSPs)
chr6 (45-155)||(7608279-7608389)
chr6 (46-155)||(21946709-21946818)
chr6 (65-155)||(16705374-16705457)
chr6 (59-155)||(3901145-3901241)
chr6 (76-154)||(10484409-10484487)
chr6 (68-154)||(10386152-10386237)
[»] chr2 (9 HSPs)
chr2 (45-155)||(16672011-16672122)
chr2 (46-155)||(18511556-18511658)
chr2 (45-148)||(7753802-7753902)
chr2 (74-155)||(21352336-21352417)
chr2 (49-155)||(42295812-42295917)
chr2 (111-155)||(10997251-10997295)
chr2 (67-154)||(22596075-22596162)
chr2 (66-143)||(34439851-34439928)
chr2 (69-155)||(33440990-33441076)
[»] chr3 (12 HSPs)
chr3 (45-138)||(37282644-37282737)
chr3 (46-155)||(32055869-32055978)
chr3 (45-138)||(19636545-19636638)
chr3 (46-155)||(25706300-25706410)
chr3 (49-155)||(1030460-1030566)
chr3 (45-155)||(19997373-19997484)
chr3 (45-155)||(29282999-29283104)
chr3 (69-138)||(39717243-39717312)
chr3 (45-155)||(27167802-27167911)
chr3 (65-143)||(48085314-48085392)
chr3 (45-96)||(48973739-48973790)
chr3 (90-155)||(40166829-40166894)
[»] scaffold0034 (1 HSPs)
scaffold0034 (67-154)||(47775-47862)
[»] scaffold0717 (1 HSPs)
scaffold0717 (69-154)||(5490-5575)
[»] scaffold0396 (1 HSPs)
scaffold0396 (49-138)||(1267-1356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (70-155)||(15489-15574)


Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 230 - 386
Target Start/End: Original strand, 48942358 - 48942514
Alignment:
Q  230 tatacagccatagaacagaagttacacaagatcaaaacagaacttaagctagaggaaaaatccgaaaagataagccccaacgtctcattatgggattgtt 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48942358 tatacagccatagaacagaagttacacaagatcaaaacagaacttaagccagaggaaaaatccaaaaagataagccccaacgtctcattatgggattgtt 48942457  T
Q  330 ttggctttgtattgaagcaaaaacccacccaattgagattacgataaggaaacgata 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48942458 ttggctttgtattgaagcaaaaacccacccaattgagattacgataaggaaacgata 48942514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 14461800 - 14461715
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14461800 ggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 14461715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 5559482 - 5559392
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||| ||||||||||| ||||||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5559482 ggttcggtttggttttgaaaatgcaatccgaaatctgatccgatcatggcggtttttccaaaacaacatccaaacacatccaaaaatattc 5559392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 24063911 - 24064021
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||| ||||||||| |||||| || ||||||||||| |  |||||||||||||||| |||||| ||||||||||||||||||||||| |||||      
T  24063911 ttacttttgtggttcggttcggtttgatttggttttgaaaaagtgatccgaaatccgatccaatcatagcggtttttccaaaacaacatccatacacaat 24064010  T
Q  145 caaaaatattc 155  Q
    ||| |||||||    
T  24064011 caataatattc 24064021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 41198518 - 41198614
Alignment:
Q  59 cggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| |||||||||| |||||| ||| |  |||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||| ||||||    
T  41198518 cggttcggtttggttcagttttggaaaagtgatccgaaatccgatccgatcttagcggtttttacaaaacaacatccaatcacatccaaatatattc 41198614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 24614848 - 24614742
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| |||||||||||||||| |||| |  |||| ||||| ||||||||| || |||||||| |||||| |||||||||  ||||||||    
T  24614848 ttttgcggttcggttcggtttggttcggttttaaaaaagtgatccaaaatctgatccgatcttagcggtttttacaaaacgacatccaaaagcatccaaa 24614749  T
Q  149 aatattc 155  Q
     ||||||    
T  24614748 tatattc 24614742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 41074992 - 41074902
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||| ||||||||| | |  ||||||||| | ||| || |||| |||||||| |||||||||||||||||||||||||||||||||    
T  41074992 ggttcggtttggttttgaagaggtgatccgaaattcaatctgaccatagcggttttttcaaaacaacatccaaacacatccaaaaatattc 41074902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 7004777 - 7004674
Alignment:
Q  52 tgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaat 151  Q
    ||||||||||||  ||||||||||||||||||||  |||||| ||||||||||| |||  | |||||||  |||||   ||| ||||||||||||| |||    
T  7004777 tgcggttcggttcagtttggttcggttttgaaaaatcaatccaaaatccgatccaatccaagcggttttcacaaaatgtcattcaaacacatccaataat 7004678  T
Q  152 attc 155  Q
    ||||    
T  7004677 attc 7004674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 16902667 - 16902572
Alignment:
Q  59 cggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| ||||||||||||||||||||| |  |||| ||||   ||| |||| |  | |||||| |||||||||||||||||||||| |||||||||    
T  16902667 cggttcggtttggttcggttttgaaaaagtgatccaaaatttaatctgatccttgcagtttttgcaaaacaacatccaaacacatctaaaaatatt 16902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 33719615 - 33719698
Alignment:
Q  71 gttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||||||||| |  ||| |||||  ||| ||||| || | |||||| ||||||||||||||||| ||||||||||||||    
T  33719615 gttcagttttgaaaaagtgatctgaaatttgattcgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 33719698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 28655640 - 28655579
Alignment:
Q  94 gaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| |||||||||| ||  | ||||| |||||||||||||||||||||| ||| ||||||    
T  28655640 gaaattcgatccgatcctattgatttttacaaaacaacatccaaacacatcgaaatatattc 28655579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 35672108 - 35672204
Alignment:
Q  59 cggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| ||||||||||||| | ||||| |  || | |||| ||||| |||| || ||||||||  |||| |||||||||||||||| ||| ||||||    
T  35672108 cggttcggtttggttcggtatcgaaaaagtgattcaaaattcgatctgatcttagcggtttttaaaaaataacatccaaacacatctaaatatattc 35672204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 1575952 - 1575842
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1575952 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 1575853  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  1575852 caaaaatattc 1575842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 27392680 - 27392590
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  27392680 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggttttttcaaaacaacatccaaacacatccaaaaatattc 27392590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 323603 - 323712
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||  |||||||||||||||||||| |  ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||    
T  323603 tacttttgcggttcggttctgtttggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 323702  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  323703 aaaaatattc 323712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 28694777 - 28694687
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||    
T  28694777 ggttcggtttggttttgaaaacgcaatccgaaatccaatccgatcatagcggtttttccataacaacatccaaacacataaaaaaatattc 28694687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 36482647 - 36482732
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||||||||  |||||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||    
T  36482647 ggttcggttttgaaaagacaatccgaaaaccgatccgatcatagtggtttttctaaaacaacatccaaacacatccaaaaatattc 36482732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 6714212 - 6714318
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| ||||||||| ||||| ||||||| || |  || ||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||    
T  6714212 ttttgcggtttggtttggttcggttcagttttgagaaagtgattcgaaatccgatccgatcctagcggtttttacaaaataacatccaaacacatccaaa 6714311  T
Q  149 aatattc 155  Q
     ||||||    
T  6714312 tatattc 6714318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 10286515 - 10286413
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| ||||||||||||||||||||| |  |||||||       || || ||| ||||||| ||||||||||||||||||||||||    
T  10286515 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 10286423  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  10286422 aaaaatattc 10286413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 38984727 - 38984669
Alignment:
Q  225 acccctatacagccatagaacagaagttacacaagatcaaaacagaacttaagctagag 283  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  38984727 acccttatacagccgtagaacagaagttacacaagatcaaaacagaacttaagctagag 38984669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 36582535 - 36582618
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    |||||||||||||||| |  ||||||||||||||| |||| || |||||||| ||||||||||||||||| |||||||| ||||    
T  36582535 ggttcggttttgaaaaagtgatccgaaatccgatcagatcttagcggtttttacaaaacaacatccaaacgcatccaaatatat 36582618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 31280189 - 31280278
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||||||||||||||| |  |||| ||||||||||||||| ||||| ||||| |||||||||||||||||  ||||||| |||||    
T  31280189 ggttcggttcggttttgaaaaagtgatccaaaatccgatccgatcttaacgatttttacaaaacaacatccaaacgtatccaaatatatt 31280278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 29988005 - 29988088
Alignment:
Q  72 ttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||| || |  |||||||||| ||||  ||| |||  |||||| |||||||||||||||||||||||||||||||||    
T  29988005 ttcggttttgagaaagtgatccgaaatctgatcgaatcctaatagtttttacaaaacaacatccaaacacatccaaaaatattc 29988088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 8937854 - 8937894
Alignment:
Q  114 cggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  8937854 cggtttttacaaaacaacatccaaacgcatccaaaaatatt 8937894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 48615023 - 48615073
Alignment:
Q  52 tgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccga 102  Q
    |||||||||||||| |||||||||||||||||||  |||||| | ||||||    
T  48615023 tgcggttcggtttgatttggttcggttttgaaaaatcaatccaagatccga 48615073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 40987449 - 40987339
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  40987449 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 40987350  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  40987349 caaaaatattc 40987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 33160626 - 33160517
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| ||||||||||| ||||||||| |  ||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||    
T  33160626 tacttttgcggttcggttcggtttggttcgattttgaaaaggtgatccgaaatccgaactgatcataacagtttttccaaaacaacctccaaacacatcc 33160527  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  33160526 aaaaatattc 33160517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 13554867 - 13554767
Alignment:
Q  55 ggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||  || ||| ||||||||||||||||||||||||||||||| |||||||||    
T  13554867 ggttcggcttggtttggttcggttttgaaaatgcaattcgaaatccgatctaattatagcggtttttccaaaacaacatccaaacacatctaaaaatatt 13554768  T
Q  155 c 155  Q
    |    
T  13554767 c 13554767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 1495889 - 1495995
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||| ||||||||||  ||||  |||||||||||||| |  |||||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||    
T  1495889 tttttcggttcggttctgtttaattcggttttgaaaaggtgatccgaaacccgatccgatcttagcggtttttacaaaacaatatccaaacacatccaaa 1495988  T
Q  149 aatattc 155  Q
     ||||||    
T  1495989 tatattc 1495995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 13521580 - 13521490
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||||||||||| |||||  |||||||||||   ||||| ||||| ||||||||||||||| ||||||||||||||||||||    
T  13521580 ggttcggttcggttttgaaaatgcaatttgaaatccgatctagtcatagcggttattccaaaacaacatctaaacacatccaaaaatattc 13521490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 27110744 - 27110654
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||||||| ||| |  ||||  |||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||    
T  27110744 ggttcggttcggttttggaaaagtgatccagaatccgatccgatcttagcggtttttacaaaacaacatccaaacacatccaaatatattc 27110654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 41061287 - 41061203
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||||||||||||||| | ||||| ||||||| ||||||| || |||||||| |||||||| |||||||| |||||||| |||||    
T  41061287 ggttcggttttgaaaaagtaatccaaaatccgttccgatcttagcggtttttacaaaacaatatccaaacgcatccaaatatatt 41061203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 12291376 - 12291475
Alignment:
Q  56 gttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||| |||||||| |||||||     ||| ||||||||||| ||| ||  ||||||| ||||||||||||||||  |||||||||||||||    
T  12291376 gttcagtttggttcggttcggtattgaaaaaatggtccaaaatccgatccaatcttagaggtttttacaaaacaacatccaaatgcatccaaaaatattc 12291475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 20210050 - 20210145
Alignment:
Q  52 tgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaa 147  Q
    |||||||||||||||||||||| |||||||||||  |||||| |||| |||||| |||  | |||||||   |||| | ||||||||||| |||||    
T  20210050 tgcggttcggtttggtttggtttggttttgaaaattcaatccaaaatacgatccaatctgagcggttttcataaaatatcatccaaacacgtccaa 20210145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 35449648 - 35449753
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||| |||  ||||||||||  ||||||||| |  |||| ||| |||| |||||| || |||||||| ||||||||||||||||| |||| |||    
T  35449648 ttttgcggttaggtacggtttggttcaattttgaaaa-gtgatccaaaagccgaaccgatcttagcggtttttacaaaacaacatccaaacgcatctaaa 35449746  T
Q  149 aatattc 155  Q
     ||||||    
T  35449747 tatattc 35449753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 42716135 - 42716225
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||||||| |||||||||| | |||||||||||  |  ||||| || |  ||||| ||||||||||||||||| ||| |||||||||||    
T  42716135 ggtttggttcagttttgaaaaagtaatccgaaatctaaatcgatcctagctttttttacaaaacaacatccaaacgcattcaaaaatattc 42716225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 155
Target Start/End: Complemental strand, 4986268 - 4986180
Alignment:
Q  67 tttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||||||||||| |  |||| ||||| |||  |||| ||  ||||| | ||||||||||||||||| |||| ||||||||||    
T  4986268 tttggttcggttttgaaaaagtgatcctaaatctgatttgatcctagtggtttatacaaaacaacatccaaacgcatcaaaaaatattc 4986180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 25932249 - 25932197
Alignment:
Q  53 gcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatcc 105  Q
    ||||||| ||||||||||||| |||||||||||  |||||| |||||||||||    
T  25932249 gcggttctgtttggtttggtttggttttgaaaattcaatccaaaatccgatcc 25932197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 32765207 - 32765310
Alignment:
Q  52 tgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaat 151  Q
    |||||||||||| |||||| |||| |||| ||||  |||||| ||||||||||  |||  |||||||||| || |||  |||| |||||||| ||| |||    
T  32765207 tgcggttcggttgggtttgtttcgcttttaaaaattcaatccaaaatccgatctaatccaaacggtttttacataacgtcatctaaacacattcaataat 32765306  T
Q  152 attc 155  Q
    ||||    
T  32765307 attc 32765310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 24575154 - 24575264
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24575154 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatc 24575253  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  24575254 caaaaatattc 24575264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 9280034 - 9279924
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  9280034 ttacttttgcggttaggttaggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 9279935  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  9279934 caaaaatattc 9279924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 47498838 - 47498947
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| |||| ||||||||||| |||| |  ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  47498838 tacttttgcggttcggttcggttcggttcggttttaaaaaggtgatccgaaatccgaaccaatcatagcggtttttccaaaacaacatccaaacacatcc 47498937  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  47498938 aaaaatattc 47498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 42414550 - 42414656
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| ||||||||||||||||||||| |  |||| ||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  42414550 ttttgcggttcggttcggtttggttcggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 42414649  T
Q  149 aatattc 155  Q
     ||||||    
T  42414650 tatattc 42414656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 3757068 - 3756962
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||||||||| || ||||||||||||||||||||| |  |||||||||||||||||||| |||||||||||  |||||||||| ||||| ||||||||    
T  3757068 ttttgcggttcgattcggtttggttcggttttgaaaaagtgatccgaaatccgatccgatcttaacggtttttaaaaaacaacattcaaacgcatccaaa 3756969  T
Q  149 aatattc 155  Q
     ||||||    
T  3756968 catattc 3756962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 7700390 - 7700297
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||    
T  7700390 ttacttttgtggtttggtttggttcggttcagttttgaaaacgcaatctgaaattcgatccgatcatagcggtttttctaaaacaacatccaaa 7700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 46251940 - 46252030
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||||||||||| |  ||||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  46251940 ggttcggttcggttttgaaaaggtgatccgaaatccgaaccaatcatagcggcttttccaaaacaacatccaaacacatccaaaaatattc 46252030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 18780958 - 18781036
Alignment:
Q  77 ttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||| ||| ||||||| |||| ||||||||||||||||||||||||| || |||||||||||||||||||||    
T  18780958 ttttgaaaacgtaattcgaaatctgatctgatcataacggtttttccaaaacaaaattcaaacacatccaaaaatattc 18781036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 42430078 - 42429988
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||| ||||||||||| |  ||||||||| ||||||||||  | |||||||| |||||||||||||||||  ||||||| ||||||    
T  42430078 ggtttggtttggttttgaaaaagtgatccgaaattcgatccgatctgagcggtttttacaaaacaacatccaaacggatccaaatatattc 42429988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 47997031 - 47997096
Alignment:
Q  90 atccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||||||||||||||||| || |||||||| ||||||||||| ||| |||||| ||||||||||    
T  47997031 atccgaaatccgatccgatcctagcggtttttacaaaacaacattcaagcacatcgaaaaatattc 47997096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 24319136 - 24319041
Alignment:
Q  60 ggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||||||||||||| || |  |||| |||| | | |||||| ||||||||||   |||||||||||||||| |||||||||||||||    
T  24319136 ggttcggtttggttcggttttgagaaagtgatccaaaattcaaaccgatcctaacggttttgataaaacaacatccaaacgcatccaaaaatattc 24319041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 56078527 - 56078436
Alignment:
Q  64 tggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||| ||||||||||||||| |  ||  ||||||||||||||||| |||  ||||| | ||||||||||||||| ||||| |||||||||    
T  56078527 tggttttgttcggttttgaaaaagtgatttgaaatccgatccgatcacaacaatttttactaaacaacatccaaacgcatccgaaaatattc 56078436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 6184090 - 6184152
Alignment:
Q  76 gttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |  |||||||||||||||||||| ||||| ||||| ||||||||||||||||    
T  6184090 gttttgaaaaagtgatccgaaatccgatccgatcctaacgatttttacaaaacaacatccaaa 6184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 24859097 - 24859007
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| ||||||||||||||||  |||||| ||||||||||| |||  |||||||||  |||||   ||||||||||||||||| |||||||    
T  24859097 ggttcggttcggttttgaaaaatcaatccaaaatccgatccaatccaaacggttttcacaaaatgtcatccaaacacatccaataatattc 24859007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 34277037 - 34276947
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||| ||||||||| |  ||||  ||| |||||||||| || |||||||| ||||||||||||||||| |||||||| ||||||    
T  34277037 ggttcggttcgattttgaaaaagtgatccagaattcgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattc 34276947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 7611794 - 7611685
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||| | ||||||||| ||||||||||||||||| ||    ||| |||||| |||| |||| || |||||||| ||||| || |||||||| || |    
T  7611794 ttacttttacagttcggtttagtttggttcggttttgagaaaatgatctgaaatctgatctgatcctagcggtttttacaaaataa-atccaaacgcaac 7611696  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  7611695 caaaaatattc 7611685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 20580681 - 20580592
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||||| ||||||||||| |  ||| |||||||||||||||| || |  || || ||||||||||| ||| | ||||||||||||||    
T  20580681 ggtttggtttggttttgaaaaagtgatctgaaatccgatccgatcctagcaattcttacaaaacaacattcaagcgcatccaaaaatatt 20580592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 37602649 - 37602710
Alignment:
Q  94 gaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||| ||||||||| || | |||||| ||||| ||||| |||||||||||||||||||||    
T  37602649 gaaatcagatccgatcctagcagtttttacaaaagaacattcaaacacatccaaaaatattc 37602710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 31568178 - 31568228
Alignment:
Q  94 gaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||| || || |||||||| ||||||||||||||| ||||||    
T  31568178 gaaatccgatccggtcttagcggtttttacaaaacaacatccaaccacatc 31568228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 40436531 - 40436458
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||| |||| ||||||||||| |  ||||||| ||||||| |||| ||||  ||||| ||||||||||||||||    
T  40436531 ggttcggtttggttttgaaaaagtgatccgaagtccgatctgatcgtaacaatttttacaaaacaacatccaaa 40436458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 9e-49; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 43620036 - 43620146
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  43620036 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaagcaacatccaaacacatc 43620135  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  43620136 caaaaatattc 43620146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 26721155 - 26721265
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  26721155 ttacttttgcggtttggtttggttcggttcggttttgaaaacgcaatccaaaataagatccgatcatagcggtttttccaaaacaacatccaaacacatc 26721254  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  26721255 caaaaatattc 26721265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 13470973 - 13470863
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||| |||||||||||||||||||||||||| |||| |||||| ||||||||||| || || ||||||||||||||||||||||||||||    
T  13470973 ttacttttgcggtttggtttggtttggttcggttttgaaaaggcaaaccgaaaaccgatccgatcgtagcgttttttccaaaacaacatccaaacacatc 13470874  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  13470873 caaaaatattc 13470863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 138
Target Start/End: Complemental strand, 1265214 - 1265121
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1265214 ttacttttgcggttcggtttggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 1265121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 31127268 - 31127358
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31127268 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 31127358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 6345394 - 6345305
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6345394 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 6345305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 37948952 - 37949041
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37948952 ggttcggtttggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatatt 37949041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 4602704 - 4602595
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| ||||||||||||||||||||| |  ||||||||||||| || |||||| ||||||| |||||||||||||||||||| |||    
T  4602704 tacttttgcggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacgtcc 4602605  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  4602604 aaaaatattc 4602595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 32907003 - 32906902
Alignment:
Q  54 cggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatat 153  Q
    |||||||||| ||||||||||||||||||||| |  ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  32907003 cggttcggttcggtttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatccaaaaatat 32906904  T
Q  154 tc 155  Q
    ||    
T  32906903 tc 32906902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 26721289 - 26721375
Alignment:
Q  69 tggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  26721289 tggttcggttttgaaaacgcaatccgaaatctgatttgatcatagcggtttttccaaaacaacgtccaaacacatccaaaaatattc 26721375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 4267450 - 4267344
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||||||| ||||||||||||||||||||| |  |||| ||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  4267450 ttttgcggttcggttcggtttggttcggttttgaaaaggtgatccaaaatccgatccgatcttagcggtttttacaaaataacatccaaacgcatccaaa 4267351  T
Q  149 aatattc 155  Q
     ||||||    
T  4267350 tatattc 4267344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 42200065 - 42200175
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| |||||| |  ||| |||| || |  ||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  42200065 ttacttttgcggttcggttcggtttgatctggtattgagaaagtgatccgaaattcgatccgatcataacggtttttataaaacaacatccaaacacatc 42200164  T
Q  145 caaaaatattc 155  Q
     ||||||||||    
T  42200165 taaaaatattc 42200175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 10183231 - 10183339
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||| |||| ||||||||||| |||  |||||||||  | || ||||||||||||| ||| |||| ||||||   ||||||||||||||||||||    
T  10183231 ttacttttgtggttaggtttggtttgattca-ttttgaaaaatcgattcgaaatccgatccaatcttaacagtttttaggaaacaacatccaaacacatc 10183329  T
Q  145 caaaaatatt 154  Q
    ||||||||||    
T  10183330 caaaaatatt 10183339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 3106272 - 3106183
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||||| || |  |||| ||||||||| ||||| || | |||||| ||||||||||||||||| ||||||||||||||    
T  3106272 ggttcggttcggttttgagaaagtgatccaaaatccgatacgatcctagcagtttttacaaaacaacatccaaacgcatccaaaaatatt 3106183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 149
Target Start/End: Original strand, 27808983 - 27809062
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaa 149  Q
    |||||||||||||||| |   || |||||||||||||||| ||||||||||| | || |||||| |||||||||||||||    
T  27808983 ggttcggttttgaaaaagtggtctgaaatccgatccgatcttaacggtttttactaaccaacattcaaacacatccaaaa 27809062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 3773915 - 3773821
Alignment:
Q  59 cggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| ||||||||| ||||||||||| |  |||| ||||||||||| ||| ||  ||||||| |||| |||||||||||| |||||||| ||||||    
T  3773915 cggttcggtttggtttggttttgaaaaagtgatccaaaatccgatcc-atcttagtggtttttacaaa-caacatccaaacgcatccaaatatattc 3773821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 7608279 - 7608389
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  7608279 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaacaaatc 7608378  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  7608379 caaaaatattc 7608389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 21946818 - 21946709
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||| || || ||| |||||||||||||||||||||||||||||||     
T  21946818 tacttttgcggttcggtttggtttggttcggttttgaaaagctgatccgaaatccgaaccaattatagcggtttttccaaaacaacatccaaacacatca 21946719  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  21946718 aaaaatattc 21946709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 16705374 - 16705457
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| |||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16705374 ggttcggttcggttttgaaaacgcaatc-------cgatccgatcatagcggtttttccaaaacaacatccaaacacatccaaaaatattc 16705457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 3901145 - 3901241
Alignment:
Q  59 cggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||| |||| ||||||||||| |||| |  ||||||| ||| ||| |||| |  |||||||  |||||||||||||||||||||||||||||||||    
T  3901145 cggttcggttcggttcggttttaaaaaagtgatccgaagtccaatctgatcttggcggttttggcaaaacaacatccaaacacatccaaaaatattc 3901241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 154
Target Start/End: Original strand, 10484409 - 10484487
Alignment:
Q  76 gttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| || |||||||||||||| ||||||||||| ||||||||  || ||||||||||||| |||  |||||||||    
T  10484409 gttttgagaaagcaatccgaaatccaatccgatcatagcggtttttagaagacaacatccaaacgcattaaaaaatatt 10484487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 10386237 - 10386152
Alignment:
Q  68 ttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||||| |  ||||||||||||||  |||| || |||||||| ||||||||||||| ||  ||||||||| ||||    
T  10386237 ttggatcggttttgaaaa-gtgatccgaaatccgatatgatcctagcggtttttacaaaacaacatccgaatgcatccaaaagtatt 10386152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 16672122 - 16672011
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaa-acacat 143  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||    
T  16672122 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcagtttttccaaaacaacatccaacacacat 16672023  T
Q  144 ccaaaaatattc 155  Q
    ||||||||||||    
T  16672022 ccaaaaatattc 16672011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 18511658 - 18511556
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| ||||||||||||||||||||| |  |||||||       || || ||| ||||||| ||||||||||||||||||||||||    
T  18511658 tacttttgcggttcggttcggtttggttcggttttgaaaaggtgatccgaa-------ccaattatagcggttttgccaaaacaacatccaaacacatcc 18511566  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  18511565 aaaaatattc 18511556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 45 - 148
Target Start/End: Complemental strand, 7753902 - 7753802
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||| ||||| ||||||||| |||| ||| ||||||||||| |  ||| |||||||||||||||||||   |||||| |||||||||||| |||||||||    
T  7753902 ttacctttgcagttcggttttgttttgtttggttttgaaaaagttatctgaaatccgatccgatcata---gtttttacaaaacaacatcaaaacacatc 7753806  T
Q  145 caaa 148  Q
    ||||    
T  7753805 caaa 7753802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 21352336 - 21352417
Alignment:
Q  74 cggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||||||||| |  |||| ||||||||||||||| || |||||||| ||||||||||||||||| |||||||| ||||||    
T  21352336 cggttttgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaatatattc 21352417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 42295812 - 42295917
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    |||||| |||||||| ||||||||||| ||||||||| |  |||||||| |||| |||||| || | |||||| ||||||||||| ||||| ||||||||    
T  42295812 ttttgcagttcggttcggtttggttcgattttgaaaa-gtgatccgaaagccgaaccgatcttagcagtttttacaaaacaacatacaaacgcatccaaa 42295910  T
Q  149 aatattc 155  Q
     ||||||    
T  42295911 tatattc 42295917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 10997295 - 10997251
Alignment:
Q  111 taacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  10997295 taacggtttttacaaaacaacatccaaacacatccaaaaatattc 10997251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 22596162 - 22596075
Alignment:
Q  67 tttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||||| ||||||||||| |  ||||||||||||||| |||| || || ||||| |||||||||||| |||  |||||||| |||||    
T  22596162 tttggtttggttttgaaaaagtgatccgaaatccgatctgatcttagcgatttttacaaaacaacatcgaaatgcatccaaatatatt 22596075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 34439928 - 34439851
Alignment:
Q  66 gtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacat 143  Q
    |||||||||||||||||||| | |||||| |||||||||| ||  || |||||||| ||||  ||||| |||||||||    
T  34439928 gtttggttcggttttgaaaaagtaatccggaatccgatccaattctagcggtttttacaaactaacattcaaacacat 34439851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 33441076 - 33440990
Alignment:
Q  69 tggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    ||||||| |||||||||  |||||| ||||||||| | |||  ||||||||   ||||| | ||||||||||||||||| |||||||    
T  33441076 tggttcgattttgaaaaatcaatccaaaatccgatgcaatccaaacggtttacgcaaaatatcatccaaacacatccaataatattc 33440990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 37282644 - 37282737
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37282644 ttacttttgcggttcggtttggttcggttcggttttgaaaacgcaatccgaaatccgatccgatcatagcggtttttccaaaacaacatccaaa 37282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 32055869 - 32055978
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatcc 145  Q
    |||||||||||||||||| | ||||||||||||||||||| |  ||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||    
T  32055869 tacttttgcggttcggttcgatttggttcggttttgaaaatgtgatccgaaatccgaaccaatcatagcggttttgccaaaacaacatccaaacacatcc 32055968  T
Q  146 aaaaatattc 155  Q
    ||||||||||    
T  32055969 aaaaatattc 32055978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 19636545 - 19636638
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  19636545 ttacttttgcggttgggtttggttcggttcggttttgaaaactcaatccgaaatccgatccgatcatcgcggcttttccaaaacaacatccaaa 19636638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 25706410 - 25706300
Alignment:
Q  46 tacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacgg-tttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||||| ||||||||||||||||||||| |  ||| ||| ||||| ||||||||| ||| ||||| ||||||||||||||||||||||    
T  25706410 tacttttgcggttcggttcggtttggttcggttttgaaaaggttatctgaagtccgaaccgatcatagcggtttttttcaaaacaacatccaaacacatc 25706311  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  25706310 caaaaatattc 25706300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 1030566 - 1030460
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaa 148  Q
    ||||||||||| ||| ||||||||||||||| ||||| |  |||| ||||||||||||||| || |||||||| ||||||||||||||||| ||||||||    
T  1030566 ttttgcggttcagttcggtttggttcggtttcgaaaaagtgatccaaaatccgatccgatcttagcggtttttacaaaacaacatccaaacgcatccaaa 1030467  T
Q  149 aatattc 155  Q
     ||||||    
T  1030466 tatattc 1030460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 19997484 - 19997373
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccg-aaatccgatccgatcataacggtttttccaaaacaacatccaaacacat 143  Q
    ||||||||||||||| ||| ||||||||||||||||||||| |  ||||| ||||||||||||||| || | |||||| | | |||||||| |||| |||    
T  19997484 ttacttttgcggttcagttcggtttggttcggttttgaaaaagtgatccgaaaatccgatccgatcttagcagtttttacgagacaacatctaaacgcat 19997385  T
Q  144 ccaaaaatattc 155  Q
    ||||| ||||||    
T  19997384 ccaaatatattc 19997373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 29283104 - 29282999
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    ||||||||||||||||||| |||| |||||  |||||| || |  |||||||||||| |||     || |||||||| ||||||||||||||||  ||||    
T  29283104 ttacttttgcggttcggttcggttcggttcaattttgagaaagtgatccgaaatccgttcc-----tagcggtttttacaaaacaacatccaaatgcatc 29283010  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  29283009 caaaaatattc 29282999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 138
Target Start/End: Original strand, 39717243 - 39717312
Alignment:
Q  69 tggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||||| |||| |  |||| |||||||| ||||||||| |||||||||||| ||||||||||||    
T  39717243 tggttcggttttcaaaaggtgatccaaaatccgaaccgatcatagcggtttttccaatacaacatccaaa 39717312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 155
Target Start/End: Original strand, 27167802 - 27167911
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatc 144  Q
    |||||||||||||||| ||||||||| |||  |||| |||| |  ||| ||||||||||  || | || |||||||| ||||||| ||| ||||| ||||    
T  27167802 ttacttttgcggttcgatttggtttgattcaattttaaaaaagtgatctgaaatccgatatgacc-tagcggtttttacaaaacagcattcaaacgcatc 27167900  T
Q  145 caaaaatattc 155  Q
    |||||||||||    
T  27167901 caaaaatattc 27167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Original strand, 48085314 - 48085392
Alignment:
Q  65 ggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacat 143  Q
    ||||||||||||||||||||| |  ||||||||||||||  |||   | || ||||| |||||||||||||||||||||    
T  48085314 ggtttggttcggttttgaaaaagtgatccgaaatccgatttgataccatcgctttttacaaaacaacatccaaacacat 48085392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 48973739 - 48973790
Alignment:
Q  45 ttacttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaa 96  Q
    |||||||||| ||||||||||||| ||||||||||| |||| | ||||||||    
T  48973739 ttacttttgcagttcggtttggttcggttcggttttcaaaaggaaatccgaa 48973790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 40166829 - 40166894
Alignment:
Q  90 atccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||||| ||||||||  ||| || |||||||| ||||||||||| |||||||||| ||| ||||||    
T  40166829 atccgatatccgatcgaatcttagcggtttttacaaaacaacattcaaacacatctaaatatattc 40166894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 47775 - 47862
Alignment:
Q  67 tttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    |||| ||||||||||| || |  ||||||||||||||| ||||||| || ||||| |||||||||||||||||||||||| |||||||    
T  47775 tttgattcggttttgagaaagtgatccgaaatccgatctgatcatagcgatttttacaaaacaacatccaaacacatccacaaatatt 47862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 5575 - 5490
Alignment:
Q  69 tggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatatt 154  Q
    ||||| ||||||||||| |  |||  ||||||||||||||| || || || || ||||||||||||||| | ||||||||||||||    
T  5575 tggtttggttttgaaaaagtgatcttaaatccgatccgatcctagcgattcttacaaaacaacatccaagcgcatccaaaaatatt 5490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 1267 - 1356
Alignment:
Q  49 ttttgcggttcggtttggtttggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaa 138  Q
    |||||||||| |||| |||||  |||| ||||||||| |  |||||||||||||| ||||| || |||| ||| |||||||| |||||||    
T  1267 ttttgcggtttggttcggtttaattcgattttgaaaaagtgatccgaaatccgattcgatcttagcggtgtttacaaaacaatatccaaa 1356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 15574 - 15489
Alignment:
Q  70 ggttcggttttgaaaacgcaatccgaaatccgatccgatcataacggtttttccaaaacaacatccaaacacatccaaaaatattc 155  Q
    |||| ||||||||||| |  ||||||||||  |||||||| || |  ||||| |||||||||| |||||| |||| ||||||||||    
T  15574 ggtttggttttgaaaaagttatccgaaatctaatccgatcctagctatttttacaaaacaacaaccaaacgcatctaaaaatattc 15489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University