View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_17 (Length: 303)
Name: NF19063_low_17
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 25602591 - 25602863
Alignment:
| Q |
11 |
cacagatagatgcaaggcgtgacatgatgccattgtttgattttattttgtaactatacactaaaacacaatatgaaattcataaactatacaaaatatt |
110 |
Q |
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| T |
25602591 |
cacagatagatgcaaggcatgacatgatgccattgtttgaatttattttgtaactatacactaaaacacaatatgaaattccaaaactatacaaaatatt |
25602690 |
T |
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| Q |
111 |
tgcagagaaatatcataaagaattacaatatccaaaatgaatgattgattgcgatttgaagcattcaagggatgaaagaacaataagtgaacaatgnnnn |
210 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25602691 |
tgc-gagaaatatcataaagaattacaatatccaaaatgaatgaatgattgcgatttgaagcattcaagggatgaaagaacaataagtgaacaatgaaaa |
25602789 |
T |
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| Q |
211 |
nnnngggttataacttataattgaattgaacaaaatttgcataataaattataagggtaattgagtatacctct |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25602790 |
aaaagggttataacttataattgaattgaacaaaatttgcataataaattataagggtaattgagtttacctct |
25602863 |
T |
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