View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_19 (Length: 297)

Name: NF19063_low_19
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_19
NF19063_low_19
[»] chr8 (2 HSPs)
chr8 (1-148)||(9492146-9492293)
chr8 (210-280)||(9492008-9492078)
[»] scaffold0048 (3 HSPs)
scaffold0048 (1-148)||(64275-64422)
scaffold0048 (1-71)||(50980-51050)
scaffold0048 (94-148)||(51047-51101)
[»] chr4 (3 HSPs)
chr4 (1-148)||(42272406-42272553)
chr4 (38-148)||(40483631-40483739)
chr4 (86-148)||(55899828-55899890)
[»] chr2 (1 HSPs)
chr2 (18-148)||(8384275-8384406)
[»] chr1 (3 HSPs)
chr1 (42-148)||(19015237-19015343)
chr1 (21-87)||(36379581-36379648)
chr1 (38-148)||(4939212-4939321)
[»] chr7 (1 HSPs)
chr7 (38-140)||(44846341-44846443)
[»] scaffold0246 (1 HSPs)
scaffold0246 (38-148)||(21570-21678)
[»] chr3 (1 HSPs)
chr3 (2-148)||(15792633-15792776)
[»] chr5 (1 HSPs)
chr5 (44-102)||(40168164-40168222)


Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9492293 - 9492146
Alignment:
Q  1 cggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgta 100  Q
    |||||||||||||||| ||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9492293 cggaccctttagtttgtttgagtcttgactaatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgta 9492194  T
Q  101 ctagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9492193 ctagggagttctcttcgccattcttaatatatcccattttgaattctt 9492146  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 9492078 - 9492008
Alignment:
Q  210 gaacttgaaggggtgtgcgttgtacatgtaaaagatactccgatgtcaaaggtgtgatagtggataaaaaa 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9492078 gaacttgaaggggtgtgtgttgtacatgtaaaagatactccgatgtcaaaggtgtgatagtggatagaaaa 9492008  T

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Target: scaffold0048 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 64275 - 64422
Alignment:
Q  1 cggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgta 100  Q
    |||| |||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  64275 cggatcctttactttgtttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtcttttgaggtggtctctttggtacatcttgta 64374  T
Q  101 ctagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    ||||||| ||||| |||||||| ||||||||  ||||||||| |||||    
T  64375 ctagggaattctcatcgccattattaatataatccattttgatttctt 64422  T

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Target: scaffold0048; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 50980 - 51050
Alignment:
Q  1 cggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtctt 71  Q
    |||| ||||||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50980 cggatcctttacattgcttgggtcttgactgatgttgtatcttgtaaatactttgtaagacggtttgtctt 51050  T

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Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 51047 - 51101
Alignment:
Q  94 tcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    |||| ||||||||||||||| |||||||| ||||||||  ||||||||| |||||    
T  51047 tcttatactagggagttctcatcgccattattaatataatccattttgatttctt 51101  T

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Target: chr4 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 42272553 - 42272406
Alignment:
Q  1 cggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgta 100  Q
    ||||||| ||||| || || |||||||| |||| ||  || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42272553 cggaccccttagtatgtttgggtcttgattgatctttcattttgtatatactttgtatgacgctttgtcttttggggtggtctctttggtacatcttgta 42272454  T
Q  101 ctagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    |||||||| ||||  ||||||| |||||||||  |||||||| |||||    
T  42272453 ctagggagctctcaccgccattgttaatatatttcattttgatttctt 42272406  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 40483739 - 40483631
Alignment:
Q  38 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 137  Q
    ||||||||| |||||||||||||||| |||||||||||||||| |||  | ||||| |||||||||| ||||| || |||||||| |||||||||| |||    
T  40483739 tatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgtagtacaacttgtactagagagtt-tcatcgccattgttaatatatcacat 40483642  T
Q  138 tttgaattctt 148  Q
    ||||| |||||    
T  40483641 tttgatttctt 40483631  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 55899890 - 55899828
Alignment:
Q  86 ttggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    ||||||||||||||||||||||| ||||  ||||||| |||||||||||| |||||| |||||    
T  55899890 ttggtacatcttgtactagggagctctcaccgccattgttaatatatcccgttttgatttctt 55899828  T

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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 8384406 - 8384275
Alignment:
Q  18 ttaggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttc 116  Q
    |||||||||||||||| || | |||||||||||||||||||||| |||||||||||  ||||| ||||||||||||||||| |||||||||| || | ||    
T  8384406 ttaggtcttgactgatctttttatcttgtatatactttgtaagatggtttgtctttaagggtgatctctttggtacatcttatactagggagctcgcatc 8384307  T
Q  117 gccattcttaatatatcccattttgaattctt 148  Q
    |||||| ||||||||||||||||||| |||||    
T  8384306 gccattgttaatatatcccattttgatttctt 8384275  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 19015237 - 19015343
Alignment:
Q  42 ttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccattttg 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||  ||||||| |||||||||| |||||||    
T  19015237 ttgtatatactttgtaagacggtttgtcttttggagtggtctctttgatacatcttgtactagggagctctcaccgccattattaatatatctcattttg 19015336  T
Q  142 aattctt 148  Q
    | |||||    
T  19015337 atttctt 19015343  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 36379648 - 36379581
Alignment:
Q  21 ggtcttgactgatgttgt-atcttgtatatactttgtaagacggtttgtcttttggggtggtctcttt 87  Q
    ||||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  36379648 ggtcttgactgatctttttatcttgtgtatactttgtaagacggtttgtcttttggggtggcctcttt 36379581  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 4939321 - 4939212
Alignment:
Q  38 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 137  Q
    |||||| || |||||||||||||| | ||| |||||||| ||| |||| |  |||| |||||||||||||| |||| |||||||| |||||||||| |||    
T  4939321 tatcttatacatactttgtaagacagcttg-cttttgggatggcctctctaatacaacttgtactagggagctctcatcgccattgttaatatatctcat 4939223  T
Q  138 tttgaattctt 148  Q
    ||||| |||||    
T  4939222 tttgatttctt 4939212  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 44846341 - 44846443
Alignment:
Q  38 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 137  Q
    ||||||||| |||||||||||||||| |||||||||||| ||| ||||||| |||| ||| ||||| |||||| || ||| |||| ||||||||||||||    
T  44846341 tatcttgtaaatactttgtaagacggattgtcttttgggatggcctctttgatacaacttatactatggagttttcatcgtcattgttaatatatcccat 44846440  T
Q  138 ttt 140  Q
    |||    
T  44846441 ttt 44846443  T

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Target: scaffold0246 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 21678 - 21570
Alignment:
Q  38 tatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtactagggagttctcttcgccattcttaatatatcccat 137  Q
    ||||||||| |||||||||||||||| |||||||||||||||| |||  | ||||| |||||||||| ||||| || |||||||| |||||||||| |||    
T  21678 tatcttgtaaatactttgtaagacgggttgtcttttggggtgg-ctccgtagtacaacttgtactagagagtt-tcatcgccattgttaatatatcacat 21581  T
Q  138 tttgaattctt 148  Q
    ||||| |||||    
T  21580 tttgatttctt 21570  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 148
Target Start/End: Complemental strand, 15792776 - 15792633
Alignment:
Q  2 ggaccctttagtttgcttaggtcttgactgatgttgtatcttgtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtac 101  Q
    |||||| |||||||| || |||||||||| || || | |  |||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  15792776 ggaccccttagtttgtttgggtcttgactaatctttttt--tgtatatacactgtaagacggtt-gtcttttggggtggtctctttggtacatcttgtac 15792680  T
Q  102 tagggagttctcttcgccattcttaatatatcccattttgaattctt 148  Q
    | || |  ||||  | ||||  ||||||||| ||||||||| |||||    
T  15792679 tcggaaaatctcaccaccatagttaatatattccattttgagttctt 15792633  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Original strand, 40168164 - 40168222
Alignment:
Q  44 gtatatactttgtaagacggtttgtcttttggggtggtctctttggtacatcttgtact 102  Q
    ||||||||||| || |||  ||||| |||||| ||||||| ||||||||||||||||||    
T  40168164 gtatatactttatatgacactttgttttttggagtggtctttttggtacatcttgtact 40168222  T

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