View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_2 (Length: 710)

Name: NF19063_low_2
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_2
NF19063_low_2
[»] chr5 (1 HSPs)
chr5 (11-696)||(14544686-14545367)


Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 11 - 696
Target Start/End: Complemental strand, 14545367 - 14544686
Alignment:
Q  11 gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccaccaccagtgcagagatgactgagttgagtttcgatcttgttcaga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  14545367 gagagagaagaaaaacaaaccagaagcagttggaagtgaagcagcagcagcaccacca---gtgcagagatgactgagttgagtttcgatcttgttcaga 14545271  T
Q  111 aacgttttagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa 210  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14545270 aacgttgtagcttcgtcaaaaggtcgagtaaggtctgatttatacttcacaagcatgtcacaataactttcctgaaacaaccataatcaacatcaataaa 14545171  T
Q  211 gttgcatttaatttatttattttcaataaaatnnnnnnn-taaatatatttttgtgttcgtgcgagcgaaacaaagaaagaaagaaaggatttaaggggg 309  Q
    ||||||||||||||||||||||||||||||||        || | |||||||||||||||||| ||||||||||||||||||||    ||||||||||||    
T  14545170 gttgcatttaatttatttattttcaataaaataaaaaaaatataaatatttttgtgttcgtgcaagcgaaacaaagaaagaaag----gatttaaggggg 14545075  T
Q  310 g-accataaattcatcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcttccaataa 408  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14545074 ggaccataaattcatcaagctcgggatcggctccaaaacacgtggaaacaacaacgtctcttttacacatatcgttttctcttcgaatctcctccaataa 14544975  T
Q  409 acttgcaatttcaggaggagcaccaacctaaacaatttattagcaattgcagaaattcgttaaactagattaagaccgtcacgttgcagagtagttacga 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14544974 acttgcaatttcaggaggagcaccaacctaaacaatttattagcaattatagaaattcgttaaactggattaagaccgtcacgttgcagagtagttacga 14544875  T
Q  509 tcaaacttagtttaa-tttaccttttgacaatcgatataggcttgaagaaggcgaggataataaggatgagaagcaattttagctttcatgatattagat 607  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14544874 tcagacttagtttaattttaccttttgacaatcgatataggcttgaagaaggcgagggtaataaggatgagaagcaattttagctttcatgatattagat 14544775  T
Q  608 gccacgtcatcttgaattccggcggaagaaggttccgccgccgtgaagatatcgtcggatccgaacataggaattcggttggttgatga 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544774 gccacgtcatcttgaattccggcggaagaaggttccgccgccgtgaagatatcgtcggatccgaacataggaattcggttggttgatga 14544686  T

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