View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_20 (Length: 293)
Name: NF19063_low_20
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 19692581 - 19692329
Alignment:
| Q |
22 |
tttagttgtgtgtgtttttgtagatgatcttatatatagtcgtaatgatgaagtcatgtttcaagagttcaacactatgatgatgaaagaatttttaatg |
121 |
Q |
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| T |
19692581 |
tttagttgtgtgtgtttttgtagatgatcttatatatattcgtaatgatgaagtcatgtttcaagagttcaacactatgatgatgaaagaatttgcaatg |
19692482 |
T |
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| Q |
122 |
actaacttaggcaagatgagatattttttgggcattgatgtcttgcaaggttgcaatggcattttcattgggcaaaagaaggatattaaggatatgctgg |
221 |
Q |
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| T |
19692481 |
actaacttaggcaagatgagatattttttgggcattgatgtcttgcaaggttgcaatggcattttcattgggcaaaagaagtatattaaggatatgctgg |
19692382 |
T |
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| Q |
222 |
aaaaagttgatatgtttgattgtaatccagggaagactcccatagttccaggt |
274 |
Q |
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| T |
19692381 |
aaaaagttgatatgtttgattgtaattcagggaagactcccatagtttcaggt |
19692329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 22 - 274
Target Start/End: Complemental strand, 19703166 - 19702914
Alignment:
| Q |
22 |
tttagttgtgtgtgtttttgtagatgatcttatatatagtcgtaatgatgaagtcatgtttcaagagttcaacactatgatgatgaaagaatttttaatg |
121 |
Q |
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| T |
19703166 |
tttagttgtgtgtgtttttgtagatgatcttatatatattcgtaatgatgaagtcatgtttcaagagttcaacactatgatgatgaaagaatttgcaatg |
19703067 |
T |
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| Q |
122 |
actaacttaggcaagatgagatattttttgggcattgatgtcttgcaaggttgcaatggcattttcattgggcaaaagaaggatattaaggatatgctgg |
221 |
Q |
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| T |
19703066 |
actaacttaggcaagatgagatattttttgggcattgatgtcttgcaaggttgcaatggcattttcattgggcaaaagaagtatattaaggatatgctgg |
19702967 |
T |
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| Q |
222 |
aaaaagttgatatgtttgattgtaatccagggaagactcccatagttccaggt |
274 |
Q |
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| T |
19702966 |
aaaaagttgatatgtttgattgtaattcagggaagactcccatagtttcaggt |
19702914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 273
Target Start/End: Original strand, 34189291 - 34189542
Alignment:
| Q |
22 |
tttagttgtgtgtgtttttgtagatgatcttatatatagtcgtaatgatgaagtcatgtttcaagagttcaacactatgatgatgaaagaatttttaatg |
121 |
Q |
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|||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
34189291 |
tttaattgtgtgtgtttatgtagatgatcttatatatactggtaatgatgaagtcatgtttcaagagttcaaaactatgatgatgaaagaatttgcaatg |
34189390 |
T |
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| Q |
122 |
actaacttaggcaagatgagatattttttgggcattgatgtcttgcaaggttgcaatggcattttcattgggcaaaagaaggatattaaggatatgctgg |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34189391 |
actgacttaggcaagatgagatattttttgggcattgaagtcttgcaaggttgcaatggcattttcattgggcaaaagaagtatattaaggatatgctga |
34189490 |
T |
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| Q |
222 |
aaaaagttgatatgtttgattgtaatccagggaagactcccatagttccagg |
273 |
Q |
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||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34189491 |
aaaaatttgatatgtctgattgtaatccagtgaagactcccatagttccagg |
34189542 |
T |
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