View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19063_low_22 (Length: 271)
Name: NF19063_low_22
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_22 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (4 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 271
Target Start/End: Original strand, 30791887 - 30792066
Alignment:
| Q |
92 |
tgataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataataataacgtaaagcacaagaa |
191 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791887 |
tgataatatggaacaacgatggatttaccaattcatatacctaatttcttccttggtcacctcacaagaaaagtaataataataacgtaaagcacaagaa |
30791986 |
T |
|
| Q |
192 |
gggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30791987 |
gggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
30792066 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 48712962 - 48712784
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataataataacgtaaagcacaagaag |
192 |
Q |
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||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||| ||| |||||||||| |||||||||||| |||||||||||||| |
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| T |
48712962 |
gataatatggaacaaagatggatgtaccaattcatatacccaattccttccttggttaccccacaagaaaattaataataataatgtaaagcacaagaat |
48712863 |
T |
|
| Q |
193 |
ggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
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| ||||||||| |||||||||||||||| || | | || | | |||||||| ||||||| ||||| ||||||||||||| |
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| T |
48712862 |
gatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatatgcttcaaactttgtcata |
48712784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 42978316 - 42978126
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataata------------ataacgta |
180 |
Q |
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||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||| ||| |||||||||| |||||||| |||| || |
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| T |
42978316 |
gataatatggaacaaagatggatgtaccaattcatataccgaattccttccttggttaccccacaagaaaattaataataataataataataataatgtc |
42978217 |
T |
|
| Q |
181 |
aagcacaagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
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||||||||||| | ||||||||| |||||||||||||||| || | | || | | |||||||| ||||||||||||| ||||||||||||| |
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| T |
42978216 |
aagcacaagaatgatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatgtgcttcaaactttgtcata |
42978126 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 54122487 - 54122677
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaa------------agtaataataataacgta |
180 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| ||||||||| | |||||||||||| ||| |
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| T |
54122487 |
gataatatggaacaaagatggatgtaccaattcatatacccaattccttccttggtcaccccacaagaaaattaataataataataataataataatgta |
54122586 |
T |
|
| Q |
181 |
aagcacaagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
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||||||||||| | ||||||||| |||||||||||||||| || | | || | |||||||| |||||| ||||| ||||||||||||| |
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| T |
54122587 |
aagcacaagaatgatgtttccattgttcttcttatccttacaattgtaatcacacccttctcatttctcaaatgcttcaaactttgtcata |
54122677 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 175 - 271
Target Start/End: Original strand, 16879950 - 16880046
Alignment:
| Q |
175 |
aacgtaaagcacaagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
| |
|
|||||||| || ||||||| ||||| ||| ||| ||||||||||| || ||| || | ||||||||||||||| |||||||| ||||||||||||| |
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| T |
16879950 |
aacgtaaaacataagaaggatgtttgcattattcatcttatccttacaattctaatctcagccttctcacttcttatgtgcttcaaactttgtcata |
16880046 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 16879848 - 16879930
Alignment:
| Q |
94 |
ataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataataataa |
176 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||||||| || | ||||||||||||||||| || || | |||||||||||| |
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| T |
16879848 |
ataatatggaacatggataaatgtaccaattcatatacccaacttcttccttggtcacctcataataataataataataataa |
16879930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 39102819 - 39102638
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataata---ataacgtaaagcacaag |
189 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||| ||||| |||||||| |||| |||||||||||| |
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| T |
39102819 |
gataatatggaacaaagatggatgtaccaattcatatacccaattccttccttggtcaccccacatgaaaattaataataataataatgtaaagcacaag |
39102720 |
T |
|
| Q |
190 |
aagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
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|| | ||||||||| |||||||||||||||| || | | || | | |||||||| ||||||||||||| ||||||||||||| |
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| T |
39102719 |
aatgatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatgtgcttcaaactttgtcata |
39102638 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 36620187 - 36620368
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaa---agtaataataataacgtaaagcacaag |
189 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| |||| |||| | |||||||||||| |||||||||||| |
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|
| T |
36620187 |
gataatatggaacaaagatggatgtaccaattcatatacccaattccttccttggtcaccccacatgaaaattaataataataataatgtaaagcacaag |
36620286 |
T |
|
| Q |
190 |
aagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
| |
|
|| | |||||||| |||||||||||||||| || | | || | | |||||||| ||||||||||||| ||||||||||||| |
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|
| T |
36620287 |
aatgacgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatgtgcttcaaactttgtcata |
36620368 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 8873682 - 8873599
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataataataa |
176 |
Q |
| |
|
||||||||||||||| |||||| ||||||| |||||||| ||||||||||||||||||| |||||||||| || ||||||||| |
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|
| T |
8873682 |
gataatatggaacaaatatggatgtaccaattcatatacccaattccttccttggtcaccccacaagaaaattagtaataataa |
8873599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 8873553 - 8873447
Alignment:
| Q |
165 |
taataataataacgtaaagcacaagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactt |
264 |
Q |
| |
|
|||||||||||| |||||| ||||||| | ||||||||| |||||||||||||||| || | | || | | |||||||| ||||||||||||| |||||| |
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| T |
8873553 |
taataataataatgtaaagtacaagaatgatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatgtgcttcaaactt |
8873454 |
T |
|
| Q |
265 |
tgtcata |
271 |
Q |
| |
|
||||||| |
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|
| T |
8873453 |
tgtcata |
8873447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 271
Target Start/End: Complemental strand, 41669372 - 41669190
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctc-acaagaaa---agtaataataataacgtaaagcacaa |
188 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||||||| | |||||||| | |||||||||||| ||||||||||| |
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|
| T |
41669372 |
gataatatggaacaaagatggatgtaccaattcatatacccaattccttccttggtcaccccaacaagaaaattaataataataataatgtaaagcacaa |
41669273 |
T |
|
| Q |
189 |
gaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
| |
|
||| | ||||||||| |||||||||||||||| || | | || | |||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
41669272 |
gaatgatgtttccattgttcttcttatccttacaattgtaatcccacccttctcatttctcacgtgcttcaaactttgtcata |
41669190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 93 - 271
Target Start/End: Original strand, 19249980 - 19250157
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatcca-tatacctaattccttccttggtcacctcacaagaaaagtaataataataacgtaaagcacaagaa |
191 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| || |||||| |||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||| |
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|
| T |
19249980 |
gataatatggaacaaggatggatataccaattcaatatacccaattccttccttggtcacctcacaagaacaataat-ataatagcgtaaagcacaagaa |
19250078 |
T |
|
| Q |
192 |
gggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtcata |
271 |
Q |
| |
|
|| ||||||||| |||||| |||| |||| || ||| || | ||||| || ||||||||||||| ||||||| ||||| |
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|
| T |
19250079 |
ggatgtttccattgttctttttattcttacaattctaat-ccatccttcgcatttctcatgtgcttcaaactttttcata |
19250157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 269
Target Start/End: Original strand, 31657592 - 31657774
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaa------agtaataataataacgtaaagcac |
186 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||| ||||||||||||||| ||| ||||||||| | |||||||||||| || |||||| |
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|
| T |
31657592 |
gataatatggaacaaagatggatgtaccaattcatataccaaattccttccttggttaccccacaagaaaattaataataataataataatgtcaagcac |
31657691 |
T |
|
| Q |
187 |
aagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaactttgtca |
269 |
Q |
| |
|
||||| | ||||||||| |||||||||||||||| || | | || | | |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
31657692 |
aagaatgatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttctcatgtgcttcaaactttgtca |
31657774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 271
Target Start/End: Original strand, 1257462 - 1257570
Alignment:
| Q |
163 |
agtaataataataacgtaaagcacaagaagggtgtttccatcgttcttcttatccttataactctgatatgagccttctcacttctcatgtgctttaaac |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| || | | || | | |||||||| || |||||||||| |||| |
|
|
| T |
1257462 |
agtaataataataatgtaaagcacaagaatgatgtttccattgttcttcttatccttacaattgtaatctcacccttctcatttgtcatgtgcttcaaac |
1257561 |
T |
|
| Q |
263 |
tttgtcata |
271 |
Q |
| |
|
||||||||| |
|
|
| T |
1257562 |
tttgtcata |
1257570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 176
Target Start/End: Original strand, 1257362 - 1257445
Alignment:
| Q |
93 |
gataatatggaacaacgatggatttaccaatccatatacctaattccttccttggtcacctcacaagaaaagtaataataataa |
176 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |||||||| ||||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
1257362 |
gataatatggaaaaaagatggatgtaccaattcatatacccgattcctttcttggtcaccccacaagaaatttaataataataa |
1257445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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