View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_25 (Length: 249)
Name: NF19063_low_25
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31901853 - 31901606
Alignment:
| Q |
1 |
tccgtgtcaaaaatatgttctattgataagagggatgcattgtatgagtaatttagtatggaagttttgaaaaagtatgtacgcatctgattgtaaagca |
100 |
Q |
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| T |
31901853 |
tccgtatcaaaagtatgttctattgataagagggatgcattgtatgagtaatttagtatggaagttttgaaaaagtatgtacgcatctgattgtaaagca |
31901754 |
T |
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| Q |
101 |
tttatagctaataccgttttattttaagagaaaaataaggaacactgtatcaaatactagtgagcggtgatagttcataattttaagcatgaaaggaatg |
200 |
Q |
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| T |
31901753 |
tttatagctaatactgttttattttaagagaaaaataaggaacactgtatcaaatactagtgagtggtg-tagttcataattttaagcatgaaaggaatg |
31901655 |
T |
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| Q |
201 |
accatagtgtaatataaatgttacacctcatacataagtctttgaccaa |
249 |
Q |
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| T |
31901654 |
accatagtgtactataaatgttacacctcatacataagtctttgaccaa |
31901606 |
T |
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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 146
Target Start/End: Original strand, 21501579 - 21501639
Alignment:
| Q |
86 |
tctgattgtaaagcatttatagctaataccgttttattttaagagaaaaataaggaacact |
146 |
Q |
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| T |
21501579 |
tctgactgcaaagcatttatagccaatactgttttattttaagagaaaaataaggaacact |
21501639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 146
Target Start/End: Original strand, 26445331 - 26445483
Alignment:
| Q |
4 |
gtgtcaaaaatatgttctattgataagagggatgcattgtatgagtaatttagtatggaagttttgaaaaagtatgt-acgcatctga-ttgt------- |
94 |
Q |
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| T |
26445331 |
gtgtcaaaaatatgttctgataataggatggatgtattgtatgagtaatttagtatagaagtattaaagaagtttttcacgtatctgacttgtctgacaa |
26445430 |
T |
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| Q |
95 |
-aaagcatttatagctaataccgttttattttaagagaaaaataaggaacact |
146 |
Q |
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| T |
26445431 |
caaagcatttatagccagtactgttttatttcaagagaaaaataaggaacact |
26445483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 26445488 - 26445538
Alignment:
| Q |
166 |
ggtgatagttcataattttaagcatgaaaggaatgaccatagtgtaatata |
216 |
Q |
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| T |
26445488 |
ggtggtagttcctaattttaagtaacaaaggaatgaccatagtgtaatata |
26445538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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