View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_27 (Length: 242)

Name: NF19063_low_27
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_27
NF19063_low_27
[»] chr6 (11 HSPs)
chr6 (1-241)||(30955204-30955444)
chr6 (1-241)||(30944944-30945184)
chr6 (1-241)||(31145397-31145637)
chr6 (1-241)||(31171710-31171950)
chr6 (1-219)||(31189455-31189673)
chr6 (2-219)||(31224476-31224693)
chr6 (1-219)||(30992453-30992671)
chr6 (1-241)||(30960949-30961189)
chr6 (1-241)||(31201262-31201502)
chr6 (1-241)||(31214185-31214425)
chr6 (1-216)||(31229759-31229974)
[»] chr7 (9 HSPs)
chr7 (143-221)||(31618457-31618535)
chr7 (146-219)||(31438982-31439055)
chr7 (143-219)||(31541209-31541285)
chr7 (137-209)||(31585591-31585663)
chr7 (140-215)||(31608444-31608519)
chr7 (143-221)||(31572804-31572881)
chr7 (8-96)||(31576052-31576140)
chr7 (8-48)||(31585462-31585502)
chr7 (8-96)||(31604718-31604806)
[»] chr1 (5 HSPs)
chr1 (134-215)||(9233930-9234011)
chr1 (137-219)||(49725148-49725230)
chr1 (137-219)||(49728570-49728652)
chr1 (134-215)||(9384383-9384464)
chr1 (143-215)||(11011057-11011129)
[»] chr4 (1 HSPs)
chr4 (140-219)||(15063329-15063408)
[»] chr8 (1 HSPs)
chr8 (140-221)||(44035640-44035721)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30955444 - 30955204
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955444 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30955345  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955344 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 30955245  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30955244 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 30955204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30945184 - 30944944
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945184 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 30945085  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30945084 gacatgaaaatagtgctctctttcttgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgcggtt 30944985  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||| |||||||||||||||||| ||||||| |||||||||    
T  30944984 ttatgtcaaaatgtaaaatccggatattacaccccctatgc 30944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31145397 - 31145637
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31145397 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31145496  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31145497 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31145596  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31145597 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31171710 - 31171950
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31171710 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31171809  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | ||| |||||||||  |   ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31171810 gacattgaaataatgctctcttgttttggacagagttttgcaagtccaaaatctgaaatctttggacataagttttcatctaaaagaatgttatgtggtt 31171909  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||| |||||||||||||| || ||  ||||||| ||||||    
T  31171910 ttatgtcaaaatgtaaaattcgagtggtacatcctctatgc 31171950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 31189455 - 31189673
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||| | ||| ||||||  || |    
T  31189455 catcattccataactataaacatcagatttgtgtgaaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctctttgatct 31189554  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    | |||  | ||| |||||||||| |   ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  31189555 gtcatcgaaataatgctctctttttttggacagagttttgcaagtccaaaatctgaaatttttggacataaattctcatctaaaagaatgttatgtggtt 31189654  T
Q  201 ttatatcaaaatgtaaaat 219  Q
    |||| || |||||||||||    
T  31189655 ttatgtcgaaatgtaaaat 31189673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 219
Target Start/End: Complemental strand, 31224693 - 31224476
Alignment:
Q  2 atcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcatttg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||||  || ||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgttcctctttgatctg 31224594  T
Q  102 acatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttt 201  Q
    ||||  | | | |||| ||||||  |||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||||    
T  31224593 acattgaaacaatgctttctttcctgagacatagttttgcaagtccaaaatctgaaatcttcggacataaattatcatctaaaaggatgttgtgtggttt 31224494  T
Q  202 tatatcaaaatgtaaaat 219  Q
    ||| ||||||||||||||    
T  31224493 tatgtcaaaatgtaaaat 31224476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 30992671 - 30992453
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || | ||| ||||||  ||      
T  30992671 catcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttctggagctacataccccattgtccctctttgatcc 30992572  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  30992571 gacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggtt 30992472  T
Q  201 ttatatcaaaatgtaaaat 219  Q
    |||| ||||||||||||||    
T  30992471 ttatgtcaaaatgtaaaat 30992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 30961189 - 30960949
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| || | ||| ||||||  ||      
T  30961189 catcattccataactataaacatcagacttgtgtgaaactcctccaaaatgtctattccacacttcaggagctacataccccattgtccctctttgatcc 30961090  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | | | |||| |||||||  || || |||||||| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||    
T  30961089 gacatcgaaacaatgctgtctttcttcaggcaaagctttgccagtccaaaatctgagatctttggacaaaaattctcatctaaaagaatgttatgtggtt 30960990  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||| |||||||||||||| || |||  |||||| ||||||    
T  30960989 ttatgtcaaaatgtaaaattcgagtagcacatcctctatgc 30960949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31201262 - 31201502
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||| |  || ||||||  || |    
T  31201262 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctctttgatct 31201361  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | ||| ||||||| |||    |||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  31201362 gacatcgaaataatgctctcgttccttggacaaagttttgcaagtccaaaatctgaaatctttggacaaaaattctcatctaaaagaatattatgtggtt 31201461  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    |||| || ||||||||||| || ||  ||||||| ||||||    
T  31201462 ttatgtcgaaatgtaaaattcgagtggtacatcctctatgc 31201502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31214425 - 31214185
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||| ||||||||||||||||||||||  ||||| |||||||| | ||||||||| |  || |||||||||||||| |  |||||||| |||  |    
T  31214425 catcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattccacaactcaggagctacatatcccatcgttcctctagcacct 31214326  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | ||| |||| ||||||| |||||| ||  ||||||||||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||||    
T  31214325 gacatcgaaataatgctttctttcttgagacaaagtcttgcaagtccaaaatctgatatctttggacaaaaattttcatctaataaaatattatgtggtt 31214226  T
Q  201 ttatatcaaaatgtaaaatccgggtattacatcccctatgc 241  Q
    ||||||||||||||||||| || ||| | ||||| ||||||    
T  31214225 ttatatcaaaatgtaaaattcgagtactgcatcctctatgc 31214185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31229974 - 31229759
Alignment:
Q  1 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgcattt 100  Q
    ||||||||||||||||||||| ||||||||||| ||||||| |||||| | | |||||||||  || ||||||||||| || | ||| ||||| || | |    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattccataactcaggagctacataccccattgtccctctagcgtct 31229875  T
Q  101 gacatgaatatagtgctctctttctcgagacagagctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggtt 200  Q
    |||||  | ||| ||||||||||||   | || ||  ||| ||||||||||||||| ||||||||||| ||||| |||| ||| || |||||||||||||    
T  31229874 gacatagaaataatgctctctttcttatggcaaagtcttgaaagtccaaaatctgatatctttggacaaaaattctcatataagaggatgttatgtggtt 31229775  T
Q  201 ttatatcaaaatgtaa 216  Q
    | || |||||||||||    
T  31229774 tgatgtcaaaatgtaa 31229759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 31618457 - 31618535
Alignment:
Q  143 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 221  Q
    |||||||||||||| || |||||||| |||| |||||| ||||||||||| || ||||||||||||| ||||| |||||    
T  31618457 agtccaaaatctgagatttttggacaaaaatcttcatccaaaagaatgttttgaggttttatatcaagatgtagaatcc 31618535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 31439055 - 31438982
Alignment:
Q  146 ccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 219  Q
    |||||||| || || |||||||| |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  31439055 ccaaaatcagatatttttggacaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 31438982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 31541209 - 31541285
Alignment:
Q  143 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 219  Q
    ||||||||||| || || || || || ||||||||||| ||||||||||| |||||||| ||||||| ||| |||||    
T  31541209 agtccaaaatcagagattttggggcaaaaattttcatccaaaagaatgttttgtggtttgatatcaagatgcaaaat 31541285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 31585591 - 31585663
Alignment:
Q  137 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaa 209  Q
    ||||| ||||||||||| || || |||||||| |||| |||||| ||||||||||| || ||||| |||||||    
T  31585591 tttgctagtccaaaatcagatatttttggacaaaaatcttcatccaaaagaatgttttggggtttgatatcaa 31585663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 31608444 - 31608519
Alignment:
Q  140 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 215  Q
    |||||||||||||| || || |||||||| || | |||||| ||||||||||| || ||||| ||||||| |||||    
T  31608444 gcaagtccaaaatcagatatttttggacaaaagtcttcatccaaaagaatgttttgaggtttgatatcaagatgta 31608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 31572881 - 31572804
Alignment:
Q  143 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 221  Q
    ||||||||||| || || ||||| || |||| |||||| ||||||||||| || ||||||||||||| ||| |||||||    
T  31572881 agtccaaaatcagagatttttgggcaaaaatcttcatccaaaagaatgttttg-ggttttatatcaagatgcaaaatcc 31572804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 31576052 - 31576140
Alignment:
Q  8 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 96  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31576052 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31576140  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 31585462 - 31585502
Alignment:
Q  8 ccataactataaacatcagacttgtgtgaaactcctccaaa 48  Q
    ||||||||||| |||||||||||||| |||||||| |||||    
T  31585462 ccataactatacacatcagacttgtgagaaactccaccaaa 31585502  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 31604718 - 31604806
Alignment:
Q  8 ccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatccgactgttcctcttgc 96  Q
    ||||||||||| |||||||| ||||  |||||||| ||||||  ||||||  || ||||||| || | |||||| | ||||||||||||    
T  31604718 ccataactatatacatcagatttgtaagaaactccaccaaatgatctattaaatgcttctggtgccatatatcctattgttcctcttgc 31604806  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 9234011 - 9233930
Alignment:
Q  134 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 215  Q
    |||||||||||||||||||| |||| |||||||   |||| ||| |||| |||||| ||||| || || |||||||||||||    
T  9234011 agctttgcaagtccaaaatccgaaacctttggaacgaaatcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9233930  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 49725230 - 49725148
Alignment:
Q  137 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 219  Q
    ||||||||||||||||| |||||  | ||    ||||| ||||| |||||||||||||| |||||||| |||||||| |||||    
T  49725230 tttgcaagtccaaaatccgaaattctggggttgaaattctcatccaaaagaatgttatgaggttttatgtcaaaatgcaaaat 49725148  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 49728652 - 49728570
Alignment:
Q  137 tttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 219  Q
    ||||||||||||||||| |||| ||| ||||| ||||  || ||||  |  || ||||| |||||||||||||||||||||||    
T  49728652 tttgcaagtccaaaatccgaaaccttaggacaaaaatcatcgtctagcaatatattatgaggttttatatcaaaatgtaaaat 49728570  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 9384383 - 9384464
Alignment:
Q  134 agctttgcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 215  Q
    |||||||||||||||||||| |||| |||||||   || | ||| |||| |||||| ||||| || || |||||||||||||    
T  9384383 agctttgcaagtccaaaatccgaaacctttggaacaaactcttcgtctagaagaatattatgaggcttgatatcaaaatgta 9384464  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 11011057 - 11011129
Alignment:
Q  143 agtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgta 215  Q
    ||||||||||| ||||  ||||||   ||||||||||| | |||||||||||| || ||||||||||| ||||    
T  11011057 agtccaaaatcagaaacttttggattgaaattttcatcaagaagaatgttatgaggctttatatcaaagtgta 11011129  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 15063408 - 15063329
Alignment:
Q  140 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaat 219  Q
    ||||| |||||||| || || ||||| || |||| |||||||||||||||||| || ||||| ||||||| ||| |||||    
T  15063408 gcaagaccaaaatcagatatttttgggcaaaaatcttcatctaaaagaatgttttgaggtttgatatcaagatgcaaaat 15063329  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 44035721 - 44035640
Alignment:
Q  140 gcaagtccaaaatctgaaatctttggacataaattttcatctaaaagaatgttatgtggttttatatcaaaatgtaaaatcc 221  Q
    |||||||||||||| || ||||| ||||   || |||| || |||||||||||||||||||| || || ||||| |||||||    
T  44035721 gcaagtccaaaatcagatatcttgggacggtaagtttcgtccaaaagaatgttatgtggtttaatgtcgaaatgaaaaatcc 44035640  T

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