View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_3 (Length: 516)
Name: NF19063_low_3
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 11 - 500
Target Start/End: Complemental strand, 28403860 - 28403361
Alignment:
| Q |
11 |
cagagactttttggagcaagaggaaagttggcaatctattttcatggtgacatgttggtacctttagacttggcgaaacaaatccatttttgaagagggt |
110 |
Q |
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| T |
28403860 |
cagagactttttggagcaagaggaaagttggcaatctattttcatggtgacatgttggtacctttggacttggcgaaacaaatccatttttgaagagggt |
28403761 |
T |
|
| Q |
111 |
ttccgacgcccaaatgatccattctttgtgatcatgaggaaggtgaaagagattgatatttataggagttcaatgaacattgcaggatgtggaggtcttt |
210 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
28403760 |
ttccgacgcccaaatgatccattcttggtgatcatgaggaaggtgaaagagattgatatttacaagagttcaatgaacattgcaggatgtggaggtcttt |
28403661 |
T |
|
| Q |
211 |
ttcaggattcagatggtcaatttcttcaggggtatacgcaaaggattggaaattgtagttttttctttt-atttgggctttggacctctttgttcacc-- |
307 |
Q |
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| T |
28403660 |
ttcaggactcagatggtcaatggctttaggggtatacgcaaaggattggaaattgtagttttttcttttcttttgggctttggacctctttgttcaacaa |
28403561 |
T |
|
| Q |
308 |
-------nnnnnnnnngtaaatttccaatttcattatcagaattaaattcaacagcaaaatgcactagaaaattttatttaatttgttcagtgcatatgt |
400 |
Q |
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| T |
28403560 |
aaaaaaaaaaaaaaaagtaaatttccaatttcattatgagaattaaattcaacagcaaaatgcactagaaaattttatttaatttgttcagtgcatatgt |
28403461 |
T |
|
| Q |
401 |
acataattcattgtgtttctatgagttagaaaaaattatgcttcaattatctttatgacaaattcttgattcatgtatcgaatgcttgaatatgacaagt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28403460 |
acataattcattgtgtttctatgagttagaaaaaattatgcttcaattttctttatgacgaattcttgattcatgtatcgaatgcttgaatatgacaagt |
28403361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 396 - 500
Target Start/End: Complemental strand, 19375330 - 19375226
Alignment:
| Q |
396 |
tatgtacataattcattgtgtttctatgagttagaaaaaattatgcttcaattatctttatgacaaattcttgattcatgtatcgaatgcttgaatatga |
495 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
19375330 |
tatgtacctaattcattgtgtttctatgatttagaaaaaattatgcttcaattttctttatgatgaattcttgattcatgtacggaatgctcgaatatga |
19375231 |
T |
|
| Q |
496 |
caagt |
500 |
Q |
| |
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||||| |
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| T |
19375230 |
caagt |
19375226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 14 - 163
Target Start/End: Original strand, 37063216 - 37063366
Alignment:
| Q |
14 |
agactttttggagcaagaggaaagttggcaatctattttcatggtgacatgttggt-acctttagacttggcgaaacaaatccatttttgaagagggttt |
112 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37063216 |
agactttttggagcaagaggaaagttgaaaatctattttcatggtgacatgtttgacacccttagacttggcgaaacaaatccatttttgaagagggctt |
37063315 |
T |
|
| Q |
113 |
ccgacgcccaaatgatccattctttgtgatcatgaggaaggtgaaagagat |
163 |
Q |
| |
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| | ||| ||||||||||| |||| || |||| ||||||||||||||||| |
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| T |
37063316 |
ctggcgcgcaaatgatccactcttggtaatcacaaggaaggtgaaagagat |
37063366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 364 - 462
Target Start/End: Original strand, 32835069 - 32835170
Alignment:
| Q |
364 |
actagaaaattttatttaa-tttgttca-gtgcatatgtacataattcattgtgtttctatgagttagaaaaaattatgcttcaa-ttatctttatgaca |
460 |
Q |
| |
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||||||||||||||||||| |||||||| ||| ||||||| |||||| |||||||||| |||||| |||||||||||||||||| |||||||||||||| |
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| T |
32835069 |
actagaaaattttatttaaatttgttcacgtgtatatgtatctaattcgttgtgtttctgtgagttcgaaaaaattatgcttcaatttatctttatgaca |
32835168 |
T |
|
| Q |
461 |
aa |
462 |
Q |
| |
|
|| |
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|
| T |
32835169 |
aa |
32835170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 37063453 - 37063535
Alignment:
| Q |
178 |
gttcaatgaacattgcaggatgtggaggtctttttcaggattcagatggtcaatttcttcaggggtatacgcaaaggattgga |
260 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||| ||| ||||||||||| | || || |||||||| |||| ||||||| |
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| T |
37063453 |
gttcaatgaacatcgcgggatgtggaggtctttttcgggactcagatggtcagtggctacaagggtatacacaaaagattgga |
37063535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 461
Target Start/End: Original strand, 32841417 - 32841517
Alignment:
| Q |
364 |
actagaaaattttatttaa-tttgttca-gtgcatatgtacataattcattgtgtttctatgagttagaaaaaattatgcttcaa-ttatctttatgaca |
460 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| || |||| |||||| | ||||||||||||||| ||||| || |||||||| |||||||||||||| |
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| T |
32841417 |
actagaaaattttatttaaatttgttcatgtgtatgtgtatctaattcgtcgtgtttctatgagttcgaaaattttttgcttcaatttatctttatgaca |
32841516 |
T |
|
| Q |
461 |
a |
461 |
Q |
| |
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| |
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|
| T |
32841517 |
a |
32841517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 210
Target Start/End: Complemental strand, 23145420 - 23145388
Alignment:
| Q |
178 |
gttcaatgaacattgcaggatgtggaggtcttt |
210 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
23145420 |
gttcaatgaacattgcaggatgtggaggtcttt |
23145388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 5188971 - 5188927
Alignment:
| Q |
263 |
ttgtagttttttcttttattt-gggctttggacctctttgttcac |
306 |
Q |
| |
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||||||||||||||||| ||| ||||||||| ||||||||||||| |
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| T |
5188971 |
ttgtagttttttcttttctttcgggctttggccctctttgttcac |
5188927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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