View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19063_low_32 (Length: 210)
Name: NF19063_low_32
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 14918781 - 14918983
Alignment:
| Q |
1 |
ttgagactcccgtatcttcttctccaagcacaagatgttctcggcccactttagtgcatatccagtaaaaatcaagtttgatatgccgcagcgttgtagc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||| |
|
|
| T |
14918781 |
ttgagactcctgtatcttcttctccaagcacaagatgttctcggcccactttagtgcatatccagtaaaaatcaagtctgatacgccgcaacattgtagc |
14918880 |
T |
|
| Q |
101 |
ttcctacatagccatgatgtgtgcttcagtactttcttctatgagctgacaactttatctcttgaaatcgacatattccttcttcactgtactacattct |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
14918881 |
ttcctacatagccatgatgtgttcttcaatactttcttctatgagctgacaactttatctcttggaatcaacatattccttcttcattgtactacattct |
14918980 |
T |
|
| Q |
201 |
ctg |
203 |
Q |
| |
|
||| |
|
|
| T |
14918981 |
ctg |
14918983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 42296862 - 42296950
Alignment:
| Q |
21 |
tctccaagcacaagatgttctcggcccactttagtgcatatccagtaaaaatcaagtttgatatgccgcagcgttgtagcttcctacat |
109 |
Q |
| |
|
||||||| ||||||||||| | |||||| |||||||| ||| || |||||| ||||| ||| | | || |||||||||||||||||| |
|
|
| T |
42296862 |
tctccaaacacaagatgttatgggcccagtttagtgcgtattcaataaaaaccaagtatgacgtatcacaacgttgtagcttcctacat |
42296950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 18399236 - 18399433
Alignment:
| Q |
1 |
ttgagactcccgtatcttcttctccaagcacaagatgttctcggcccactttagtgcatatccagtaaaaatcaagtttgatatgccgcagcgttgtagc |
100 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| || || | ||||||||||| |||||||||| |||| ||||| || || | | || |||| |||| |
|
|
| T |
18399236 |
ttgagactccattatcttcctttccaagcacatgaccttatgggcccactttaatgcatatccaacaaaac-caagtctggtacgtcacaacgttatagc |
18399334 |
T |
|
| Q |
101 |
ttcctacatagccatgatgtgtgcttcagtactttcttctatgagctgacaactttatctcttgaaatcgacatattccttcttcactgtactacattc |
199 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| ||| |||||||||| || | |||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
18399335 |
ttcctacatcgccatgatgtgtcgttcagtactatctcctatgagctggcagccttatctcttggaatcaacatattccttcttccttgtactacattc |
18399433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 10358670 - 10358513
Alignment:
| Q |
1 |
ttgagactcccgtatcttcttctccaagcacaagatgttctcggcccactttagtgcatatccagtaaaaatcaagtttgatatgccgcagcgttgtagc |
100 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||| | | |||||||||||||||||||| | ||| ||| | ||||| | ||||| ||||||| |
|
|
| T |
10358670 |
ttgagactcccttatcttcctctccaagcacaagatgttatggacccactttagtgcatatcca--acaaaccaaatctgatacgttgcagcattgtagc |
10358573 |
T |
|
| Q |
101 |
ttcctacatagccatgatgtgtgcttcagtactttcttctatgagctgacaactttatct |
160 |
Q |
| |
|
||||||||| |||| ||||| |||| |||||||| ||||| |||| ||||||||||| |
|
|
| T |
10358572 |
ttcctacatcgccaggatgtaagctttgatactttctcctatgggctgtcaactttatct |
10358513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 52973821 - 52973928
Alignment:
| Q |
93 |
gttgtagcttcctacatagccatgatgtgtgcttcagtactttcttctatgagctgacaactttatctcttgaaatcgacatattccttcttcactgtac |
192 |
Q |
| |
|
|||| |||||||| ||| ||| ||||| | ||||| |||| ||| || |||| || || | |||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
52973821 |
gttgcagcttcctgcatcaccaggatgtattcttcaatactctctcctctgagttgtcagccttatctcttgtaatcaacatattccttcttctttgtac |
52973920 |
T |
|
| Q |
193 |
tacattct |
200 |
Q |
| |
|
|||||||| |
|
|
| T |
52973921 |
tacattct |
52973928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 53151338 - 53151263
Alignment:
| Q |
124 |
cttcagtactttcttctatgagctgacaactttatctcttgaaatcgacatattccttcttcactgtactacattc |
199 |
Q |
| |
|
||||| ||| |||| |||||||| |||||| |||||||||| |||| ||||||||||| ||| ||||| |||||| |
|
|
| T |
53151338 |
cttcaataccttctgctatgagccgacaaccttatctcttggaatcaacatattccttattccttgtacaacattc |
53151263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 35944593 - 35944536
Alignment:
| Q |
3 |
gagactcccgtatcttcttctccaagcacaagatgttctcggcccactttagtgcata |
60 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||||| | || ||||||||||||||| |
|
|
| T |
35944593 |
gagactctcttatctttatctccaagcacaagatgttatgggtccactttagtgcata |
35944536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University