View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19063_low_4 (Length: 500)
Name: NF19063_low_4
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19063_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 10284517 - 10284984
Alignment:
| Q |
17 |
gcatcatatttaattttcgatttgcttcaacaagttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatcaaa-ttcagt |
115 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10284517 |
gcatcatatttaagtttcgatttgcttcaataagttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatcaaaattcagt |
10284616 |
T |
|
| Q |
116 |
tcttgacctatatagcttagtttcaactagtaaaat-attcacgacaagacaatttttgtaagggtaagattcttgattacttattatgcgaaatgagaa |
214 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10284617 |
tcttgagttatatagcttagtttcaactagtaaaattattcacgacaagacaatttttgtaatggtaagattcttgattacttattatgcgaaatgagaa |
10284716 |
T |
|
| Q |
215 |
tttagtgacttgaattaaagaatatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagactctttatttgttgtacaaagggtt |
314 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
10284717 |
tttagtgacttgaattaaagaatatatcgt--tagttaaattaaattttcaaattcggcatcataattttcatgactctttat---ttgtacaaagggtt |
10284811 |
T |
|
| Q |
315 |
ccccttagatgaaggatcttgatttagatgcactgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttacaactaaacca-cccc |
413 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
10284812 |
ccccttagatgaaggatcttcctttagatgcacagggttacaatgccaaatagaaaataaaaagttattattcctttctttttacaactaaaccaccccc |
10284911 |
T |
|
| Q |
414 |
catgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcatttctctcat |
486 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
10284912 |
catgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttatcatttctctcat |
10284984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 486
Target Start/End: Original strand, 10265511 - 10265959
Alignment:
| Q |
17 |
gcatcatatttaattttcgatttgcttcaacaagttctcaacataaataattaatcaagttaatttcttgtgatactagtaaagcgcatcaaa-ttcagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
10265511 |
gcatcatatttaattttcgatttgcttcaacaagttctcaacataaataat----caagttaatttcttgtgagactagtaaagcgcatcaaaattcagt |
10265606 |
T |
|
| Q |
116 |
tcttgacctatatagcttagtttcaactagtaaaatattcacgacaagacaatttttgtaagggtaagattcttgattacttattatgcgaaatgagaat |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
10265607 |
tcttgagttatatagcttagtttcaactagtaaaatattcacgacaagacaatttttgtaatggtaag--------------attatgcgaaatgagaat |
10265692 |
T |
|
| Q |
216 |
ttagtgacttgaattaaagaatatatcgttatagttaaattaaattttcaaattcggcatcataattttcaagactctttatttgttgtacaaagggttc |
315 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
10265693 |
ttagtgacttgaattaaagaatgtatcgt--tagttaaattaaattttcaaattcggcatcataattttcaagacactttat---ttgtacaaagggttc |
10265787 |
T |
|
| Q |
316 |
cccttagatgaaggatcttgatttagatgcactgggttacaatgccnnnnnnnnnnnnnnnngttattattcctttctttttacaactaaacca-ccccc |
414 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
10265788 |
cccttagatgaaggatcttcctttagatgcacagggttacaatgccaaatagaaaataaaaagttattattcctttctttttacaactaaaccacccccc |
10265887 |
T |
|
| Q |
415 |
atgaacaaaatttcattctctccatcatactacccaagtctgggatttggattcccttgtcatttctctcat |
486 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
10265888 |
atgaacaaaattttattctctccatcatactacccaagtctgggatttggatcctcttgtcatttctctcat |
10265959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 10256054 - 10256099
Alignment:
| Q |
37 |
tttgcttcaacaagttctcaacataaataattaatcaagttaattt |
82 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||| ||||||||||| |
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| T |
10256054 |
tttgcttcaacaggttctcaacataaataactaaccaagttaattt |
10256099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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