View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_6 (Length: 476)

Name: NF19063_low_6
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_6
NF19063_low_6
[»] chr3 (3 HSPs)
chr3 (351-460)||(35410122-35410231)
chr3 (364-456)||(24756778-24756870)
chr3 (364-456)||(24765775-24765867)
[»] scaffold0009 (1 HSPs)
scaffold0009 (364-456)||(79759-79851)
[»] chr7 (3 HSPs)
chr7 (168-262)||(18399084-18399179)
chr7 (168-217)||(6238911-6238960)
chr7 (63-147)||(18399215-18399299)
[»] chr8 (1 HSPs)
chr8 (415-456)||(3929468-3929509)
[»] chr2 (1 HSPs)
chr2 (168-224)||(14918665-14918722)
[»] chr1 (1 HSPs)
chr1 (63-151)||(10358607-10358695)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 351 - 460
Target Start/End: Original strand, 35410122 - 35410231
Alignment:
Q  351 gtgttcaggttgataagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttc 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35410122 gtgttcaggttgataagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttc 35410221  T
Q  451 ctcttactac 460  Q
    ||||||||||    
T  35410222 ctcttactac 35410231  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 24756778 - 24756870
Alignment:
Q  364 taagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttcctctta 456  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24756778 taagttatattcattaactgattagtgatatcttttattctatattggttacctgtaacttacaaatacacctttattattgttttcctctta 24756870  T

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Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 364 - 456
Target Start/End: Original strand, 24765775 - 24765867
Alignment:
Q  364 taagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttcctctta 456  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24765775 taagttatattcattaactgattagtgatatcttttattctatattggttacctgtaacttacaaatacacctttattattgttttcctctta 24765867  T

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Target: scaffold0009 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 79851 - 79759
Alignment:
Q  364 taagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttcctctta 456  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79851 taagttatattcattaaccgattagtgatatcttttattctatattggttacctgtaacttgcaaatacacctttattattgttttcctctta 79759  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 18399179 - 18399084
Alignment:
Q  168 tcacatgggaaaagaccaaaaggacacaaaaggataagaaatgacttgtattataaagaaacaacaa-accttaattgcaagagtgtgctagtggt 262  Q
    ||||||||||||||||||||| | ||| ||||||||||||| |||||||| ||||||  ||||| || |||| | ||| ||| |||||||||||||    
T  18399179 tcacatgggaaaagaccaaaatggcactaaaggataagaaaagacttgtactataaaagaacaaaaagacctaatttgaaagggtgtgctagtggt 18399084  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 6238911 - 6238960
Alignment:
Q  168 tcacatgggaaaagaccaaaaggacacaaaaggataagaaatgacttgta 217  Q
    ||||||||||||||||||||||| ||  ||||||||| ||| ||||||||    
T  6238911 tcacatgggaaaagaccaaaagggcattaaaggataataaaagacttgta 6238960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 18399299 - 18399215
Alignment:
Q  63 tggatatgtattaaaatgggaccaaaacatcatatgcttggagagaaagataaaagagtctcaaatagcacaccaaaaggataag 147  Q
    |||||||| |||||| |||| ||| ||  |||| |||||||| || |||||||  ||||||||||||| |||| ||| |||||||    
T  18399299 tggatatgcattaaagtgggcccataaggtcatgtgcttggaaaggaagataatggagtctcaaatagtacacaaaagggataag 18399215  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 456
Target Start/End: Complemental strand, 3929509 - 3929468
Alignment:
Q  415 cctgtaacttgcaaatacacctttattattgttttcctctta 456  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  3929509 cctgtaacttgcaaatacacctttattattgctttcctctta 3929468  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 14918722 - 14918665
Alignment:
Q  168 tcacatgggaaaagaccaaaa-ggacacaaaaggataagaaatgacttgtattataaa 224  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||||||||| ||||||    
T  14918722 tcacatgggaaaagaccaaaaaggacactcaaggataggaaatgacttgtactataaa 14918665  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 10358607 - 10358695
Alignment:
Q  63 tggatatgtattaaaatgggaccaaaacatcatatgcttggagagaaagataaaagagtctcaaatagcacaccaaaaggataaggtat 151  Q
    |||||||| | |||| |||| ||| |||||| | ||||||||||| |||||||  |||||||||| || |  ||||| |||||||||||    
T  10358607 tggatatgcactaaagtgggtccataacatcttgtgcttggagaggaagataagggagtctcaaacagtaacccaaagggataaggtat 10358695  T

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