View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_8 (Length: 435)

Name: NF19063_low_8
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_8
NF19063_low_8
[»] chr6 (12 HSPs)
chr6 (17-427)||(30945317-30945725)
chr6 (193-427)||(30955577-30955809)
chr6 (234-427)||(31230110-31230303)
chr6 (267-427)||(31145101-31145261)
chr6 (267-427)||(31189159-31189319)
chr6 (267-405)||(31200966-31201104)
chr6 (17-127)||(30955869-30955980)
chr6 (259-427)||(30961325-30961493)
chr6 (263-427)||(31171410-31171574)
chr6 (264-427)||(31224830-31224993)
chr6 (263-427)||(30992807-30992971)
chr6 (321-405)||(31214580-31214664)
[»] chr8 (1 HSPs)
chr8 (314-394)||(44036038-44036118)


Alignment Details
Target: chr6 (Bit Score: 280; Significance: 1e-156; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 17 - 427
Target Start/End: Complemental strand, 30945725 - 30945317
Alignment:
Q  17 aaaatgaacttcataaaaatcaataacagtacaaacttctactcttctttgccttcagttatccacatagatcacattggtatttgaatcacatatatgt 116  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945725 aaaatgaacttcataaaaatcaataacaatacaaacttctactcttctttgccttcagttatccacatagatcacattggtatttgaatcacatatatgt 30945626  T
Q  117 aatctacttgccnnnnnnnnnnnnnnnnnnaagtacgaaaaaagtattatgaagaacataccnnnnnnnnnnnnnnacaaaatgaaaagttaacttgaaa 216  Q
    ||||||||||||                  ||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||    
T  30945625 aatctacttgcctaataataataataataaaagtacgaaaaaagtattatgaagaacatacctttttcatttttttacaaaatgaaaagttaacttgaaa 30945526  T
Q  217 tatatactaatagatccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcat 316  Q
    ||||  || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30945525 tata--cttatagatccaaatttcaagaagttgaagattccaataatgatcttgtaggagaagaaaccaaaggttttggtggtatttcaaggatattcat 30945428  T
Q  317 gctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30945427 gctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatagtcattccttttgcaatc 30945328  T
Q  417 tcatattcttc 427  Q
    |||| ||||||    
T  30945327 tcattttcttc 30945317  T

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Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 193 - 427
Target Start/End: Complemental strand, 30955809 - 30955577
Alignment:
Q  193 acaaaatgaaaagttaacttgaaatatatactaatagatccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttt 292  Q
    ||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955809 acaaaatgaaaagttaacttgaaatata--cttatagatccaaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttt 30955712  T
Q  293 tggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaacca 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955711 tggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaacca 30955612  T
Q  393 acaatggtcattccttttgcaatctcatattcttc 427  Q
    |||||||||||||||||||||||||||| ||||||    
T  30955611 acaatggtcattccttttgcaatctcattttcttc 30955577  T

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Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 234 - 427
Target Start/End: Complemental strand, 31230303 - 31230110
Alignment:
Q  234 aaatttcaagaagttgaagattccaataatgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacattt 333  Q
    |||||||| |||| ||| |||||   || ||||||||||||||||||||  | |||||||||||||||||| |    |||| || | ||||| |||||||    
T  31230303 aaatttcatgaagctgatgattcttgtactgatctagtaggagaagaaagaataggttttggtggtatttccaaacaattcttgttgccttctaacattt 31230204  T
Q  334 caatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||   ||||||| |||| ||||||    
T  31230203 caatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatcttcttc 31230110  T

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Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 427
Target Start/End: Original strand, 31145101 - 31145261
Alignment:
Q  267 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 366  Q
    |||||||||||||||| ||| ||||| ||||||||||||||   ||||||| || |||| ||||||||||| ||| |||||||||| |||| |||| |||    
T  31145101 ctagtaggagaagaaagcaacggtttgggtggtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttg 31145200  T
Q  367 gcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
    | ||||||||||||||||||||||| ||||| |||||||   |||||||||||| ||||||    
T  31145201 gaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31145261  T

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Target: chr6; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 267 - 427
Target Start/End: Original strand, 31189159 - 31189319
Alignment:
Q  267 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 366  Q
    |||||||| |||||||   | ||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||    
T  31189159 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31189258  T
Q  367 gcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
    | ||||||||||||||||||||||| ||||| |||||||   |||||||||| | ||||||    
T  31189259 gaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcgtcttcttc 31189319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 405
Target Start/End: Original strand, 31200966 - 31201104
Alignment:
Q  267 ctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttg 366  Q
    |||||||| |||||||   | ||||| |||||||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||    
T  31200966 ctagtaggtgaagaaagatatggtttaggtggtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttg 31201065  T
Q  367 gcaatgtttgaatgcaccataaaccaacaatggtcattc 405  Q
    | ||||||||||||||||||||||| ||||| |||||||    
T  31201066 gaaatgtttgaatgcaccataaacccacaattgtcattc 31201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 30955980 - 30955869
Alignment:
Q  17 aaaatgaacttcataaaaatcaataacagtacaaacttctactcttcttt-gccttcagttatccacatagatcacattggtatttgaatcacatatatg 115  Q
    |||||||||||||||||||||||| |||  |||| ||| ||| ||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||    
T  30955980 aaaatgaacttcataaaaatcaatgacaaaacaaccttttacacttcttcagccttaacttatccacatagatcacattggtatttgaatcacatatatg 30955881  T
Q  116 taatctacttgc 127  Q
    ||||||| ||||    
T  30955880 taatctaattgc 30955869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 259 - 427
Target Start/End: Complemental strand, 30961493 - 30961325
Alignment:
Q  259 ataatgatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtc 357  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||| || || ||||||| || |||| ||||||||||  ||| |||||||||| || |    
T  30961493 ataatgatctagtaggagacgaaagcaatggttttggtggtatttccaatga-attcatgttaacttctaacatttcaactactttactcattgtaggcc 30961395  T
Q  358 gatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
       |||| || ||||||||||| ||||| ||||| |||||||||||||  ||||||||||||| ||||||    
T  30961394 tgccattaggaaatgtttgaatacaccacaaacccacaatggtcattctctttgcaatctcattttcttc 30961325  T

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Target: chr6; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 427
Target Start/End: Original strand, 31171410 - 31171574
Alignment:
Q  263 tgatctagtaggagaagaaaccaaaggttttggtggtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatca 362  Q
    ||||||||| ||||| |||   || ||||||||||| ||||| ||   ||||||  || |||| ||||||||||||||| |||||||||| |||| ||||    
T  31171410 tgatctagtgggagatgaatgtaatggttttggtggcatttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtctatca 31171509  T
Q  363 tttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
     |||| ||||||||||||||||||||||| ||||| |||||||   |||||||||||| ||||||    
T  31171510 cttggaaatgtttgaatgcaccataaacccacaatagtcattctccttgcaatctcatcttcttc 31171574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 427
Target Start/End: Complemental strand, 31224993 - 31224830
Alignment:
Q  264 gatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatca 362  Q
    |||||||| |||||||||| ||| ||||||||||| ||||| || || |||||||||| | || ||||||||||||||| |||||||||| || | ||||    
T  31224993 gatctagtcggagaagaaagcaatggttttggtggcatttccaacga-attcatgctaacatctaacatttcaatcactttactcattgtaggcctatca 31224895  T
Q  363 tttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
    || || || |||||||| ||||| ||||| |||||||||||||   ||||||||| || ||||||    
T  31224894 ttaggaaacgtttgaatacaccacaaacctacaatggtcattctccttgcaatcttatcttcttc 31224830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 427
Target Start/End: Complemental strand, 30992971 - 30992807
Alignment:
Q  263 tgatctagtaggagaagaaaccaaaggttttggtggtatttc-aaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatc 361  Q
    ||||||||||||||| |||| ||| ||||||||||||||||| || || ||| |||  | |||| ||||||||||  ||| |||||||||| ||||   |    
T  30992971 tgatctagtaggagacgaaagcaatggttttggtggtatttccaacga-attaatgtcaacttctaacatttcaactactttactcattgtaggtctgcc 30992873  T
Q  362 atttggcaatgtttgaatgcaccataaaccaacaatggtcattccttttgcaatctcatattcttc 427  Q
    ||| || ||||||||||| ||||| ||||  ||||||||||| |  ||||||||||||| ||||||    
T  30992872 attaggaaatgtttgaatacaccacaaactcacaatggtcatcctctttgcaatctcatcttcttc 30992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 31214664 - 31214580
Alignment:
Q  321 ccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaatggtcattc 405  Q
    ||||| ||||||||||| |||||||||||||  |||| ||||||||| | |||||||||||||||||| || || ||||||||||    
T  31214664 ccttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattc 31214580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 394
Target Start/End: Complemental strand, 44036118 - 44036038
Alignment:
Q  314 catgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaac 394  Q
    ||||||||| |||||||| ||||||||| |||| ||||| |||| || | | || | ||||||||||||||| ||||||||    
T  44036118 catgctaccatccaacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaaccaac 44036038  T

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