View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19063_low_9 (Length: 420)

Name: NF19063_low_9
Description: NF19063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19063_low_9
NF19063_low_9
[»] chr5 (7 HSPs)
chr5 (1-410)||(29021532-29021941)
chr5 (111-406)||(28695545-28695840)
chr5 (162-406)||(28673346-28673590)
chr5 (3-135)||(28661108-28661240)
chr5 (253-349)||(28662717-28662815)
chr5 (189-245)||(28662057-28662113)
chr5 (329-384)||(28532571-28532626)
[»] chr4 (11 HSPs)
chr4 (116-386)||(8186386-8186656)
chr4 (247-378)||(532587-532718)
chr4 (171-216)||(2373556-2373601)
chr4 (171-228)||(12124509-12124566)
chr4 (171-213)||(2367990-2368032)
chr4 (171-213)||(5106641-5106683)
chr4 (174-215)||(2391349-2391390)
chr4 (171-213)||(2363162-2363204)
chr4 (171-213)||(2518912-2518954)
chr4 (81-143)||(21833269-21833331)
chr4 (186-230)||(6007324-6007368)
[»] chr8 (5 HSPs)
chr8 (165-381)||(18314714-18314929)
chr8 (253-381)||(18318807-18318935)
chr8 (78-213)||(18318632-18318767)
chr8 (267-381)||(32151732-32151846)
chr8 (180-216)||(32151897-32151933)
[»] scaffold1155 (1 HSPs)
scaffold1155 (24-101)||(1821-1898)
[»] scaffold0345 (1 HSPs)
scaffold0345 (24-101)||(8318-8395)
[»] scaffold0105 (1 HSPs)
scaffold0105 (24-101)||(30584-30661)
[»] chr3 (1 HSPs)
chr3 (285-384)||(13469872-13469968)
[»] chr6 (1 HSPs)
chr6 (267-386)||(9411886-9412005)
[»] chr1 (1 HSPs)
chr1 (81-143)||(19467423-19467485)


Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 29021941 - 29021532
Alignment:
Q  1 tgacctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  29021941 tgacctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctccgaccaagatatctttcccgcagatggtttgcga 29021842  T
Q  101 gctttcagtaaaaacattactactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctt 200  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||    
T  29021841 gctttcagcaaaaacattactactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctt 29021742  T
Q  201 tgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccg 300  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29021741 tgctcgaagaactcgatcttagttatcctgtaaagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccg 29021642  T
Q  301 caaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgt 400  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||    
T  29021641 caaggttgatctctctcgtcattgctatatcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagttattgtcattttttgt 29021542  T
Q  401 cctagaataa 410  Q
    ||||||||||    
T  29021541 cctagaataa 29021532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 111 - 406
Target Start/End: Original strand, 28695545 - 28695840
Alignment:
Q  111 aaaacattactactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaaga 210  Q
    |||||||||| ||| ||| |||||||||||||| |||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  28695545 aaaacattacaactatgacctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgcccgaaga 28695644  T
Q  211 acttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgtt 310  Q
    ||| ||| ||||| ||||   |||| ||| ||| | ||||| ||||| ||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |    
T  28695645 actcgatattagtgatcccagagagttcatctaccacagtagcttacacgatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaat 28695744  T
Q  311 ctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctaga 406  Q
    ||||||||||||  ||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||| ||||    
T  28695745 ctctctcgtcatcactacatcaacggccaaccacttttccacttgataaacaactgcaagcttctcgaagaggttatagtcttttcttgtcataga 28695840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 162 - 406
Target Start/End: Original strand, 28673346 - 28673590
Alignment:
Q  162 atagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcga 261  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| ||| ||| | |||||  |||| |||    
T  28673346 atagcaccgatctcttcttcattgctgattgcttccctttgctcgaagaactcgatcttagtgatcccggagagttcatctaccacagtagtttacacga 28673445  T
Q  262 tggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaac 361  Q
    |||| | ||||||||||||||| ||||||| |||||| ||||||||  |||||||| ||||  ||| ||||||||||||||||||||||| |||||||||    
T  28673446 tggtgttgaggctatttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaac 28673545  T
Q  362 aactgtaagcttctcgaagaagttactgtcatttcttgtcctaga 406  Q
    |||||||||||||||||||| ||||  ||| ||||||||| ||||    
T  28673546 aactgtaagcttctcgaagaggttatagtcttttcttgtcataga 28673590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 3 - 135
Target Start/End: Original strand, 28661108 - 28661240
Alignment:
Q  3 acctcgactcgcttctctttcaaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgagc 102  Q
    |||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||| | || || |||||||||||||| |||||||| ||||    
T  28661108 accttgactcacttctatttcaaatctctagcttcccgttgaacctcacatctctcaatttctgcaacaaaaatatctttcccgcacatggtttgggagc 28661207  T
Q  103 tttcagtaaaaacattactactttgatctctct 135  Q
    ||||||  |||||||||| ||||||| ||||||    
T  28661208 tttcagccaaaacattacaactttgacctctct 28661240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 28662717 - 28662815
Alignment:
Q  253 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggtt--gttctctctcgtcattgctatatcaacgaccaatcacttttc 349  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||    |||||||||||||   || |||||||||||||||||||||    
T  28662717 cttactcgatggtttagatgctatttcattgtcacttttcaaactctggaaggttaatctctctctcgtcatcaatacatcaacgaccaatcacttttc 28662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 28662057 - 28662113
Alignment:
Q  189 attgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatc 245  Q
    ||||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||    
T  28662057 attgcttccctttgctcgaagaactcgatcttagtgatcccgaagagttcaactatc 28662113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 384
Target Start/End: Complemental strand, 28532626 - 28532571
Alignment:
Q  329 atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 384  Q
    |||||| |||||||||||||||||||| | | |||||||||||||||| |||||||    
T  28532626 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 28532571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 386
Target Start/End: Original strand, 8186386 - 8186656
Alignment:
Q  116 attactactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttg 215  Q
    ||||| ||||||| ||| ||||| |||| | || ||||| |  ||||||||||| |  ||||| |||| || ||||| || ||||| || |||||||| |    
T  8186386 attacaactttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcg 8186485  T
Q  216 atcttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctc 315  Q
    |||| ||| | |||  |||| ||||| ||| ||||| |||  | |||||  | |||||| |||||||| ||||||| ||||| |||||||||  ||| ||    
T  8186486 atctcagtaaccctaaagagttcaacaatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggttaatctatc 8186585  T
Q  316 tcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagtta 386  Q
    |  ||||  ||||||||||||| |||  ||||| |||||| |||| || ||||||| ||||||||| ||||    
T  8186586 taatcataactatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggtta 8186656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 247 - 378
Target Start/End: Complemental strand, 532718 - 532587
Alignment:
Q  247 cagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcactt 346  Q
    ||||| ||| ||| ||||| | ||| || ||||||| |||||||| |||||||||||||||  ||| |||  ||||  ||| |||||||||||||| |||    
T  532718 cagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgctt 532619  T
Q  347 ttccacttgataaacaactgtaagcttctcga 378  Q
    ||||||||| | || || ||||||||||||||    
T  532618 ttccacttgttcaaaaattgtaagcttctcga 532587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 2373556 - 2373601
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaacttga 216  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  2373556 atctcttcttcattgctgattgtttccctttgctcgaagaacttga 2373601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 12124566 - 12124509
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcc 228  Q
    |||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||    
T  12124566 atctcttcttcattgctgattgtttccctttactagaagaacttgacctcagttatcc 12124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 2367990 - 2368032
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  2367990 atctcttcttcattgctgattgtttccctttactcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 5106641 - 5106683
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  5106641 atctcttcttcattgctgattgtttccctttactcgaagaact 5106683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 2391349 - 2391390
Alignment:
Q  174 tcttcttcattgctgattgcttccctttgctcgaagaacttg 215  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  2391349 tcttcttcattgttgattgcttccctttactcgaagaacttg 2391390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 2363162 - 2363204
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaact 2363204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 2518954 - 2518912
Alignment:
Q  171 atctcttcttcattgctgattgcttccctttgctcgaagaact 213  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  2518954 atctcttcttcattgctgattgtttccctttactcaaagaact 2518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 21833269 - 21833331
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgtt 143  Q
    ||||||||||||| ||||||| |||     |||||||||||||||||| ||||||||||||||    
T  21833269 ttcccgcagatgggttgcgagtttttgcacaaaacattactactttgacctctctcacttgtt 21833331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 6007368 - 6007324
Alignment:
Q  186 ctgattgcttccctttgctcgaagaacttgatcttagttatcctg 230  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||||    
T  6007368 ctgattgttttcctttactcgaagaacttgatcttagttaccctg 6007324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 381
Target Start/End: Original strand, 18314714 - 18314929
Alignment:
Q  165 gcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatgg 264  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||| || |||||||| ||   |||| | ||  |||     | ||||||| ||||    
T  18314714 gcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagttaaaaaatcatgaaagcttactcaatgg 18314813  T
Q  265 tttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaac 364  Q
      |||||| | ||||| |  ||||||| |||||||| ||||||  | || ||  ||||| ||| |||||||| ||||| |||||||||||| | || |||    
T  18314814 aatagaggttctttca-tcacacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaac 18314912  T
Q  365 tgtaagcttctcgaaga 381  Q
    |||||||||||||||||    
T  18314913 tgtaagcttctcgaaga 18314929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 381
Target Start/End: Original strand, 18318807 - 18318935
Alignment:
Q  253 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccac 352  Q
    ||||||||||||  |||||| | |||| ||  ||||||  |||||||| ||||||| |||| || |||||  |||||||| ||| ||||| ||| |||||    
T  18318807 cttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccac 18318906  T
Q  353 ttgataaacaactgtaagcttctcgaaga 381  Q
    ||| | || ||||| ||||||||||||||    
T  18318907 ttgttcaagaactggaagcttctcgaaga 18318935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 18318632 - 18318767
Alignment:
Q  78 tctttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctctt 177  Q
    |||||||||| |||||  |||||| |||| | ||||| ||||| ||||||| ||| ||||| ||||    |||| ||   |||||||||||| |||||||    
T  18318632 tctttcccgcggatgggctgcgagttttctgcaaaaatattacaactttgacctcactcacatgttctggccttcaatgtctcaatagcacttatctctt 18318731  T
Q  178 cttcattgctgattgcttccctttgctcgaagaact 213  Q
    | ||||||| ||||| |||||||| || ||||||||    
T  18318732 cctcattgcagattgtttccctttccttgaagaact 18318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 381
Target Start/End: Complemental strand, 32151846 - 32151732
Alignment:
Q  267 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 366  Q
    |||||||| |||||  | |||||| ||||||| | ||||||  |||| |  |||||  |||||| || || ||||| |||||||||||| | ||||||||    
T  32151846 tagaggctctttcaacggcactttataaactctggaaggttaatctcacaagtcatcactatattaaagatcaatcgcttttccacttgttcaacaactg 32151747  T
Q  367 taagcttctcgaaga 381  Q
     ||||||||||||||    
T  32151746 gaagcttctcgaaga 32151732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 32151933 - 32151897
Alignment:
Q  180 tcattgctgattgcttccctttgctcgaagaacttga 216  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  32151933 tcattgccgattgtttccctttgctcgaagaacttga 32151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 1821 - 1898
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  1821 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 1898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 8395 - 8318
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  8395 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 8318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 30584 - 30661
Alignment:
Q  24 aaatctctcgcttccctttgaacctcacatctctcaatttctcccaccaagatatctttcccgcagatggtttgcgag 101  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||| |||||   ||  ||||||||||||| |||||||    
T  30584 aaatctctcgtttcccattgaacctcacatcactcaatctctcctaccaacccataattcccgcagatgggttgcgag 30661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 13469872 - 13469968
Alignment:
Q  285 cactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 384  Q
    |||||||||||||||||||||||  ||| ||| ||  || |||||  ||| ||| |||||||||||||||  |  |||||||||||||||||||||||||    
T  13469872 cactttttaaactccgcaaggttaatctttctagtt-ttcctata--aacaacctatcacttttccacttattccacaactgtaagcttctcgaagaagt 13469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 386
Target Start/End: Complemental strand, 9412005 - 9411886
Alignment:
Q  267 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 366  Q
    ||||| || |||||||| ||||||| ||||||  |||| ||  ||||||| |||||  ||| |||||||||  |||||| ||| ||||| | || |||||    
T  9412005 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 9411906  T
Q  367 taagcttctcgaagaagtta 386  Q
    |||||||||| |||| ||||    
T  9411905 taagcttctccaagaggtta 9411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 19467423 - 19467485
Alignment:
Q  81 ttcccgcagatggtttgcgagctttcagtaaaaacattactactttgatctctctcacttgtt 143  Q
    |||||||| |||| ||||||| ||||| | |||| ||||| ||||||| ||||||||||||||    
T  19467423 ttcccgcaaatgggttgcgagttttcactcaaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University