View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19064_high_2 (Length: 489)
Name: NF19064_high_2
Description: NF19064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19064_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 47470312 - 47469850
Alignment:
| Q |
11 |
caaaggaggaatagcaccttcacgacacaccattacacgataactcacattctcttcacaaatcttcaacaaaatcgccgccgcaatttccttatgtctc |
110 |
Q |
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| T |
47470312 |
caaaggaggaatagcaccttcacgacacaccattacacgataactcacattctcttcacaaatcttcaacaaaatcgccgccgcaatttccttctgtctc |
47470213 |
T |
|
| Q |
111 |
tgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctccaccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacat |
210 |
Q |
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| T |
47470212 |
tgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctccgccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacat |
47470113 |
T |
|
| Q |
211 |
acgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctccttcac |
310 |
Q |
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| T |
47470112 |
acgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaaaggcttcattattccagcttttatcgctctgattttgttctcgttcac |
47470013 |
T |
|
| Q |
311 |
cgaacacagcgagtatagagccgttgacgcgtcctttttcccgcggattcctccattttctagaaggttcaccaatgccggaattgcaccacatcttcca |
410 |
Q |
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| T |
47470012 |
cgaacacagcgagtataaagccgttgacgcatcctttttcccgcggattcctccgttttctagaaggttcaccaatgccggaattgcaccacatcttcca |
47469913 |
T |
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| Q |
411 |
attgctcctttattctcttctgtctgtgagagacgaagtagagcacatgctgcattctctttc |
473 |
Q |
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| T |
47469912 |
attgctcctttattctcttctgtctgtgagagacgaagtagagcacatgctgcattctctttc |
47469850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 63 - 412
Target Start/End: Original strand, 5220515 - 5220864
Alignment:
| Q |
63 |
tcttcacaaatcttcaacaaaatcgccgccgcaatttccttatgtctctgcgtcccaacctccacaatctccaccaacaccggtatccctccttcctcca |
162 |
Q |
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||||||||||||| |||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| | || |||||||||| |
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| T |
5220515 |
tcttcacaaatctgtaacagaataaccgccgcaatttccttctgtctctgcgatccaacctccacaatctcaaccaacaccggcacaccaccttcctcca |
5220614 |
T |
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| Q |
163 |
ccaaagccgttctcgcctccgtaaccgtcaccaacacgctcatcacatacgctgacttatccaccatgttcgaatcaaaatccgccattaattcaactaa |
262 |
Q |
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|||| || ||||||||| |||| ||||| || |||| ||||| || || ||||||||||| ||||| |||||||||||||| || ||||| || |
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| T |
5220615 |
ccaacgcaaccttcgcctccggcaccgataccaatacactcaaaacataagccgatttatccaccatattcgattcaaaatccgccatcaactcaaccaa |
5220714 |
T |
|
| Q |
263 |
aggcttcattattccagcttttatcgctctgattttgttctccttcaccgaacacagcgagtatagagccgttgacgcgtcctttttcccgcggattcct |
362 |
Q |
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||||||||| || ||||| | |||||| || || ||||||||||| |||||||| | || || ||||| ||||||||||| |||||||| |||||| |
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| T |
5220715 |
caccttcattatccccgctttcaccgctctcatcttattctccttcacagaacacagagtatacagcgccgtagacgcgtccttcttcccgcgtattcct |
5220814 |
T |
|
| Q |
363 |
ccattttctagaaggttcaccaatgccggaattgcaccacatcttccaat |
412 |
Q |
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||| || ||||||| ||||||||| |||||||||||| |||||||||| |
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| T |
5220815 |
ccacttcctagaagattcaccaataacggaattgcaccggatcttccaat |
5220864 |
T |
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