View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19064_high_6 (Length: 330)
Name: NF19064_high_6
Description: NF19064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19064_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 48960281 - 48960592
Alignment:
| Q |
18 |
agcttgtgtcagctggaagtgccaattgaatccgatgcttttccccatttctttaattttatacgggtcatgtctcgaattcatggtctattatat-ata |
116 |
Q |
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| T |
48960281 |
agcttgtgtcagctggaagtgccaattgaatccgatgcttt-ccccatttctttaattttatacgggtcatgtctcgaattcatggtctattatattata |
48960379 |
T |
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| Q |
117 |
ttcacnnnnnnnncttttcctacctgcgacaacttgtgttttaaactcatcattgttcttctgtcctatgaggtgaaaactgttctataaataaaacaca |
216 |
Q |
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| T |
48960380 |
ttcacttttttt-cttttcctacctgcgacaacttgtgttttaaactcatcattgttcttctgtcctatgaggtgaaaactgttctataaataaaacaca |
48960478 |
T |
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| Q |
217 |
gcctcttccatatttttgtgtgctcattttttgtctcctccatttttcagtttacaacttctcttcacaaacttttaacatttccccaacaaagaaacac |
316 |
Q |
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| T |
48960479 |
gcctcttccatatttttgtgtgctcattttttgtctcctccatatttcagtttacaacttctcttcacaaacttttaacatttccccaacaaagaaacgc |
48960578 |
T |
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| Q |
317 |
catggctaacccac |
330 |
Q |
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| T |
48960579 |
catggctaacccac |
48960592 |
T |
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