View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19064_low_4 (Length: 346)
Name: NF19064_low_4
Description: NF19064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19064_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 331
Target Start/End: Original strand, 48713953 - 48714268
Alignment:
| Q |
16 |
acaagcagcattcaatttgtgagaagcaaatttctttggctggattttacccacatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
115 |
Q |
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| T |
48713953 |
acaagcagcattcaatttgttagaagcaaatttctttggctggattttacccgcatgtagtgggtcctacacatacatctaatctagttataaatagaaa |
48714052 |
T |
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| Q |
116 |
tacgagtgttgagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactcc |
215 |
Q |
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| T |
48714053 |
tgtgagtgttaagtattttggagggaagtaaaattaaaaggtcaaacaaacaaaaatgttaggtccggcatgctgctcaaacccaccaattctgaactct |
48714152 |
T |
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| Q |
216 |
ttcagtggtgctggccatgttgctaaacttggtggtgttgatgcttatctcactggttctcctctttgcaccttcgtcattctcctcgtctccgacgttt |
315 |
Q |
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| T |
48714153 |
ttcagtggtgctggccatgttgctaaacttggtggtgttgatgcttatctcactggttctcctctttgcaccttcgtcattctcctcgtctccgacattt |
48714252 |
T |
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| Q |
316 |
ttggtactgttctatt |
331 |
Q |
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| T |
48714253 |
ttggtactgttctatt |
48714268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 89 - 287
Target Start/End: Original strand, 48695754 - 48695958
Alignment:
| Q |
89 |
tacatctaatctagttataaatagaaatacgagtgttgagtattttggagggaagtaaaatta--------aaaggtcaaacaaacaaaaatgttaggtc |
180 |
Q |
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| T |
48695754 |
tacatctagtctagttataaatagaaatgggagtgttgagtatt--ggagggaagtgcagttagcaaaacaaaaagtcaaagaaacaaaaatgtcaggtc |
48695851 |
T |
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| Q |
181 |
cggcatgctgctcaaacccaccaattctgaactccttcagtggtgctggccatgttgctaaacttggtggtgttgatgcttatctcactggttctcctct |
280 |
Q |
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| T |
48695852 |
atgcatgctgctctaacccaccaattctgaacccctttagtggagctggccatgttgaaaaaattggtggtcttgatgcttacctcactggctctcctct |
48695951 |
T |
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| Q |
281 |
ttgcacc |
287 |
Q |
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| T |
48695952 |
ttccacc |
48695958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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