View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19064_low_5 (Length: 342)
Name: NF19064_low_5
Description: NF19064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19064_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 10257780 - 10257889
Alignment:
| Q |
136 |
agaaattgtgaatcgagatgggaaatcttctttattttctcttgtcaaagcatttgattcagtgctttctggttacgaaggattctgcaacttgaaacag |
235 |
Q |
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| T |
10257780 |
agaaattgtgaatcgagatgggaaatcttctttattttctcttgtcaaagcatttgattcagtgctttctggttacgaaggattctgcaacttgaaacag |
10257879 |
T |
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| Q |
236 |
gttagaattt |
245 |
Q |
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| T |
10257880 |
gttagaattt |
10257889 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 10257646 - 10257681
Alignment:
| Q |
11 |
ttattcttgctcttcatgttcttagaaatgatggta |
46 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
10257646 |
ttattcttgctcttcatgttcttagaaatgatggta |
10257681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 40376246 - 40376348
Alignment:
| Q |
136 |
agaaattgtgaatcgagatgggaaatcttctttattttctcttgtcaaagcatttgattcagtgctttctggttacgaaggattctgcaacttgaaacag |
235 |
Q |
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||||||||||||| ||||||||||||| || || |||||||||| || || ||||| || || ||| || ||| ||||||||||| || ||||| ||| |
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| T |
40376246 |
agaaattgtgaatggagatgggaaatcatcgttgctttctcttgttaaggcttttgactctgttcttaatgtttatgaaggattctgtaatttgaagcag |
40376345 |
T |
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| Q |
236 |
gtt |
238 |
Q |
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||| |
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| T |
40376346 |
gtt |
40376348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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