View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19065_high_1 (Length: 811)

Name: NF19065_high_1
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19065_high_1
NF19065_high_1
[»] chr5 (6 HSPs)
chr5 (11-313)||(31778083-31778391)
chr5 (311-584)||(31778418-31778695)
chr5 (11-254)||(30651737-30651980)
chr5 (611-797)||(31778690-31778877)
chr5 (425-603)||(9890353-9890529)
chr5 (538-603)||(11831462-11831527)
[»] chr7 (11 HSPs)
chr7 (126-291)||(25628905-25629074)
chr7 (425-603)||(7474474-7474652)
chr7 (483-616)||(1096753-1096886)
chr7 (11-124)||(25628362-25628478)
chr7 (425-563)||(37141922-37142060)
chr7 (488-603)||(32069016-32069131)
chr7 (126-174)||(30250112-30250160)
chr7 (339-378)||(25630549-25630588)
chr7 (424-506)||(3877769-3877851)
chr7 (345-391)||(25641299-25641345)
chr7 (502-603)||(1556252-1556353)
[»] chr4 (4 HSPs)
chr4 (425-551)||(1509411-1509537)
chr4 (651-797)||(1509568-1509715)
chr4 (541-603)||(6970620-6970682)
chr4 (510-603)||(8023923-8024016)
[»] chr6 (7 HSPs)
chr6 (424-603)||(19840887-19841066)
chr6 (426-589)||(28052166-28052329)
chr6 (431-601)||(31926312-31926482)
chr6 (515-603)||(13117481-13117569)
chr6 (429-501)||(18072362-18072433)
chr6 (539-602)||(30490158-30490221)
chr6 (120-180)||(1146803-1146863)
[»] scaffold0329 (1 HSPs)
scaffold0329 (425-600)||(19551-19726)
[»] chr1 (4 HSPs)
chr1 (428-563)||(32933359-32933494)
chr1 (422-551)||(17198481-17198610)
chr1 (495-603)||(39834883-39834992)
chr1 (543-600)||(29828121-29828178)
[»] chr8 (3 HSPs)
chr8 (114-226)||(4028209-4028321)
chr8 (480-599)||(26925134-26925254)
chr8 (444-603)||(12050858-12051017)
[»] chr3 (3 HSPs)
chr3 (480-603)||(27056859-27056982)
chr3 (429-562)||(27383077-27383210)
chr3 (556-685)||(22915564-22915693)
[»] scaffold0351 (1 HSPs)
scaffold0351 (483-581)||(2895-2993)
[»] chr2 (2 HSPs)
chr2 (114-207)||(29352108-29352201)
chr2 (114-153)||(34325616-34325655)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 11 - 313
Target Start/End: Original strand, 31778083 - 31778391
Alignment:
Q  11 cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagtttttgttct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31778083 cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatcattagttagtttttgttct 31778182  T
Q  111 caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgat--tacgaagcatatgataaattaataaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||     
T  31778183 caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattatacgaagcatatgataaactaataaat 31778282  T
Q  209 catcttgtaattatgaatgttgcagctttgacaattttatattga----atttgtatcgtctttctatttgaaaattgatgtggtttaacaattgtttgt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31778283 catcttgtaattatgaatgttgcagctttgacaattttatattgaaagtatttgtaccgtctttctatttgaaaattgatgtggtttaacaattgtttgt 31778382  T
Q  305 atttcattt 313  Q
    |||||||||    
T  31778383 atttcattt 31778391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 311 - 584
Target Start/End: Original strand, 31778418 - 31778695
Alignment:
Q  311 tttaagtatcttgacaaagcttagattcttcaga----atacctgacagctttaacaatatgacatctcttatgtcactagattttttctggatttaagc 406  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31778418 tttaagtatcttgacaaagcttagattcttcagatcgaatacctgacagctttaacaatatgacatctcttatgtcactagattttttctggatttaagc 31778517  T
Q  407 ttttgcagtatttctgaacactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctac 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  31778518 ttttgcagtatttctgaacactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagctaatttcttgcaaaactcatttagctac 31778617  T
Q  507 cctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagc 584  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31778618 cctttagttgtgatttagctgtcatactggccgtagcatggattgggcggcaaattatcaaataaaatatttcctagc 31778695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 30651737 - 30651980
Alignment:
Q  11 cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagtttttgttct 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  30651737 cacagatgattgagaaacttgacggtgtggaaaaagcatattccaaaataataatctataagaaaaatggaggaataaatcattagttagtttttgttct 30651836  T
Q  111 caattattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaacca 210  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30651837 caattattaggatcattttatcttaaataataaaaagtggtttatcaatcacccattatcatatttatgattacgaagcatatgataaattaataaacca 30651936  T
Q  211 tcttgtaattatgaatgttgcagctttgacaattttatattgaa 254  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  30651937 tcttgtaattatgaatgttgcagctttgacaaatttatattgaa 30651980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 611 - 797
Target Start/End: Original strand, 31778690 - 31778877
Alignment:
Q  611 cctagccaaaacccaactaatctgtagtcaaatatcggttaaaagtataagttccgcaactaaatggcttggatattgtagcaatagtttcgtagtaaat 710  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31778690 cctagccaaaacccaactaatctgtagccaaatatcggttaaaagtataagttccgcaactaaatggcttggatattgtagcaatagtttcgtagtaaat 31778789  T
Q  711 ctctagctacaagttcctagctatttccaatgaaaatccaaacttttacgatttattc-cataatataaatgttgctcagttgtttat 797  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  31778790 ctctagctaaaagttcctagctatttccaatgaaaatccaagcttttacgatttattcacataatataaatgttgctcagttgtttat 31778877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 425 - 603
Target Start/End: Original strand, 9890353 - 9890529
Alignment:
Q  425 cactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctacc---ctttagttgtgatt 521  Q
    |||| ||||||||||||  ||||||||| ||  |||| || |||||| | |||| ||| ||| |||||||||||||| |||||    |||||||||||||    
T  9890353 cactgcaagaaaatcacagatttgctacgaattaaatcgtagctaacgcgcagctaatatctagcaaaactcatttacctaccattttttagttgtgatt 9890452  T
Q  522 tagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    |||||||||   ||  | |||||||||||| ||||||||||| || | |||||||||||||||||| | | |||||||||||    
T  9890453 tagctgtca---tgatc-tagcatggattgggcggcaaatta-catagaaaatatttcctagctaactggaaactaatattt 9890529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 603
Target Start/End: Complemental strand, 11831527 - 11831462
Alignment:
Q  538 cgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    |||||||||||||| ||| ||||||| | |  |||||||||||||||||| | |||| ||||||||    
T  11831527 cgtagcatggattgggcgtcaaattacctatcaaaatatttcctagctaactggcaattaatattt 11831462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 5e-52; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 126 - 291
Target Start/End: Original strand, 25628905 - 25629074
Alignment:
Q  126 ttttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaaccatcttgtaattatgaa 225  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  25628905 ttttatctttaataataaaaagtggtttgtcaatcaccaattatcatatttatgattacgaagcatatgaaaaattaataaaccattttgtaattatgaa 25629004  T
Q  226 tgttgcagctttgacaattttatatt----gaatttgtatcgtctttctatttgaaaattgatgtggttt 291  Q
    | |||||||||| || ||||||||||    | |||||||   |||||||||||||||||| |||||||||    
T  25629005 ttttgcagctttaaccattttatattaaaagtatttgtaatatctttctatttgaaaatttatgtggttt 25629074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 425 - 603
Target Start/End: Complemental strand, 7474652 - 7474474
Alignment:
Q  425 cactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttag 524  Q
    |||||||||||||||||| ||||||||| ||  |||| || | |||||| |||| | ||||| |||||||||||||||||||  ||| ||||||||||||    
T  7474652 cactacaagaaaatcactgatttgctacgaagaaaattgtagttaactcgcagctattttctagcaaaactcatttagctactattttgttgtgatttag 7474553  T
Q  525 ctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    |||||| |||| |||||| |||||||| ||||||||||||| |   |||||||||||||||||||||||||||||||||    
T  7474552 ctgtcatactggccgtagtatggattgggcggcaaattatctagagaaatatttcctagctaatttgcaactaatattt 7474474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 483 - 616
Target Start/End: Complemental strand, 1096886 - 1096753
Alignment:
Q  483 ttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttccta 582  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||  ||||||||||| |||  |||||||||||||    
T  1096886 ttctagcaaaactcatttacctaccatttagttgtgatttagctgtcatattgaccgtagcatggatttggcggcaaattaccaagcaaaatatttccta 1096787  T
Q  583 gctaatttgcaactaatattttaagatgcctagc 616  Q
    ||| ||||||||||||||||| || || ||||||    
T  1096786 gcttatttgcaactaatatttaaaaattcctagc 1096753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 25628362 - 25628478
Alignment:
Q  11 cacagatgattgaggaacttgacggtgtggaaaaagcatattccgaaataataatctataagaaaaatggaggaatagatctttagttagttt---ttgt 107  Q
    |||||||||||||||||||||||||||| ||| || |||||||   ||| ||| ||||||||||||||||||||||| ||| |||||||||||   ||||    
T  25628362 cacagatgattgaggaacttgacggtgttgaagaaacatattcaagaattatattctataagaaaaatggaggaataaatcattagttagtttttgttgt 25628461  T
Q  108 tctcaattattaggatc 124  Q
    |||||||||||||||||    
T  25628462 tctcaattattaggatc 25628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 563
Target Start/End: Original strand, 37141922 - 37142060
Alignment:
Q  425 cactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttag 524  Q
    |||||||||||||||||| ||||||||| |||||||| || || ||  |   || || | || ||||||| |||||||||||| ||||||||||||||||    
T  37141922 cactacaagaaaatcactgatttgctacgaaacaaatcgtagccaatgcgtcgctaaatactagcaaaacacatttagctaccatttagttgtgatttag 37142021  T
Q  525 ctgtcaaactgtccgtagcatggattgtgcggcaaatta 563  Q
    |||||| |||| ||||||||||||||| |||| ||||||    
T  37142022 ctgtcatactggccgtagcatggattgggcggaaaatta 37142060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 488 - 603
Target Start/End: Original strand, 32069016 - 32069131
Alignment:
Q  488 gcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaa 587  Q
    ||||||| |||||||||||   || |||| || |||||||||| | || | ||||||||||||| ||||||||||||| |  |||||||||||||||||     
T  32069016 gcaaaacacatttagctactactttgttgggaattagctgtcatattggctgtagcatggattgggcggcaaattatctatcaaaatatttcctagctat 32069115  T
Q  588 tttgcaactaatattt 603  Q
    || |||||||| ||||    
T  32069116 ttggcaactaaaattt 32069131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 30250112 - 30250160
Alignment:
Q  126 ttttatcttgaataataaaaagtggtttgtcaatcacccattatcatat 174  Q
    ||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  30250112 ttttaccttgagtaataaaaagtggtttgtcaatcactcattatcatat 30250160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 339 - 378
Target Start/End: Original strand, 25630549 - 25630588
Alignment:
Q  339 ttcagaatacctgacagctttaacaatatgacatctctta 378  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  25630549 ttcagaatacctgatagctttaacaatatgacatctctta 25630588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 424 - 506
Target Start/End: Complemental strand, 3877851 - 3877769
Alignment:
Q  424 acactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctac 506  Q
    ||||||||||||||||| | |||||||||||||  ||| || ||||| ||| ||  ||||||| | |||||||||||||||||    
T  3877851 acactacaagaaaatcagtgatttgctacaaaattaatagtagctaaatcatagttaatttctagtaaaactcatttagctac 3877769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 25641299 - 25641345
Alignment:
Q  345 atacctgacagctttaacaatatgacatctcttatgtcactagattt 391  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||    
T  25641299 atacctgacagctttaacaatatgacaaatcttatgacactagattt 25641345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 502 - 603
Target Start/End: Complemental strand, 1556353 - 1556252
Alignment:
Q  502 gctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatat 601  Q
    |||||| ||||| |||||||||||||||| |||| | |||||||||| || || |||||||| | |  |||||||| |||||| |||  | |||||||||    
T  1556353 gctaccttttaggtgtgatttagctgtcatactggctgtagcatggaatgggcagcaaattacctagcaaaatattacctagccaatcggtaactaatat 1556254  T
Q  602 tt 603  Q
    ||    
T  1556253 tt 1556252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 5e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 425 - 551
Target Start/End: Original strand, 1509411 - 1509537
Alignment:
Q  425 cactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttag 524  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||    
T  1509411 cactacaagaaaatcactgatttgctacaaaacaaatggtagctaactcgcagctaatttctagcaaaactcatttagctaccttttagttgtgatttag 1509510  T
Q  525 ctgtcaaactgtccgtagcatggattg 551  Q
    |||||| |||| |||||||||||||||    
T  1509511 ctgtcatactggccgtagcatggattg 1509537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 651 - 797
Target Start/End: Original strand, 1509568 - 1509715
Alignment:
Q  651 aaaagtataagttccgcaactaaatggcttggatattgtagcaatagtttcgtagtaaatctctagctacaagttcctagctatttccaatgaaaatcca 750  Q
    |||||||||||||   ||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |    
T  1509568 aaaagtataagttttacaactaaatggcttggatattgttgcaaaagtttcatagtaaatcactagctacaagttcctagctatttcaaatgaaaatcaa 1509667  T
Q  751 aacttttacgatttattc-cataatataaatgttgctcagttgtttat 797  Q
    | |||||||| |||||||  ||| ||||||||||||||||||||||||    
T  1509668 agcttttacggtttattcatatattataaatgttgctcagttgtttat 1509715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 603
Target Start/End: Original strand, 6970620 - 6970682
Alignment:
Q  541 agcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    ||||||||||| ||||||||||||| | | |||||||||||||||||||||| |||| |||||    
T  6970620 agcatggattgggcggcaaattatctactgaaatatttcctagctaatttgccactattattt 6970682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 603
Target Start/End: Original strand, 8023923 - 8024016
Alignment:
Q  510 ttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    ||||||| || |||||||||| | || ||||||||||||||   | |||||||||| | ||||||| ||||||| ||||| | |||||||||||    
T  8023923 ttagttgggaattagctgtcatattggccgtagcatggatttgacagcaaattatctattaaaataattcctaggtaattggtaactaatattt 8024016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 3e-44; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 424 - 603
Target Start/End: Complemental strand, 19841066 - 19840887
Alignment:
Q  424 acactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgattta 523  Q
    ||||||| |||||||||   ||||||||| ||| |||| || ||||   |||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  19841066 acactactagaaaatcatggatttgctacgaaataaatcgtagctattgcacagctaatttctagcaaaactcatttacctaccatttagttgtgattta 19840967  T
Q  524 gctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    ||||||| |||| ||||||||||||||| ||||||||||||| |  |||||||||||||||||||| |||||||||||||    
T  19840966 gctgtcacactggccgtagcatggattgggcggcaaattatctaccaaaatatttcctagctaattcgcaactaatattt 19840887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 426 - 589
Target Start/End: Complemental strand, 28052329 - 28052166
Alignment:
Q  426 actacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagc 525  Q
    |||||||||||||| || |||||||| |||||||||||| ||| ||||  ||| ||||||| |||||||||||||||||||| ||| |||||||||||||    
T  28052329 actacaagaaaatcgctgatttgctataaaacaaatggtagcttactcgtagctaatttctagcaaaactcatttagctaccatttggttgtgatttagc 28052230  T
Q  526 tgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatt 589  Q
    ||||| ||   |||||||||| |||| ||||||||||||| | |||||||||||||||| ||||    
T  28052229 tgtcatacatgccgtagcatgtattgggcggcaaattatctagtaaaatatttcctagcaaatt 28052166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 431 - 601
Target Start/End: Complemental strand, 31926482 - 31926312
Alignment:
Q  431 aagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtca 530  Q
    |||||||||||||||||||||| ||||||||||  ||||||||  ||| ||||||| |||||||| ||| ||||||| |||||||||||||||||||||     
T  31926482 aagaaaatcacttatttgctacgaaacaaatggaagctaactcgtagctaatttctagcaaaacttattaagctaccatttagttgtgatttagctgtcg 31926383  T
Q  531 aactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatat 601  Q
     |||| ||||||||||||||| |||| |||| | | | |||  ||||||| |||||||| |||||||||||    
T  31926382 tactggccgtagcatggattgggcggaaaatcacctagtaagttatttccgagctaattggcaactaatat 31926312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 515 - 603
Target Start/End: Original strand, 13117481 - 13117569
Alignment:
Q  515 tgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
    ||||| |||||||||| | ||  | |||||||||||| | ||||||||||| | |||||||||||||||||||||  ||||||||||||    
T  13117481 tgtgaattagctgtcacattgatcctagcatggattgagtggcaaattatctagtaaaatatttcctagctaattctcaactaatattt 13117569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 429 - 501
Target Start/End: Complemental strand, 18072433 - 18072362
Alignment:
Q  429 acaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcattta 501  Q
    |||||||||||||| |||||||||||| |||||||| ||||| |  |||| ||||||| ||||||||||||||    
T  18072433 acaagaaaatcactgatttgctacaaa-caaatggtagctaagttgcagctaatttctagcaaaactcattta 18072362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 539 - 602
Target Start/End: Original strand, 30490158 - 30490221
Alignment:
Q  539 gtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatatt 602  Q
    ||||||||||||| |||| |||||||| |  |||||||||||||||||||| | ||||||||||    
T  30490158 gtagcatggattgggcggaaaattatctaccaaaatatttcctagctaattggtaactaatatt 30490221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 1146803 - 1146863
Alignment:
Q  120 ggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatga 180  Q
    ||||||||||| |||| |||||||||  || ||||||| ||||||||||||||| ||||||    
T  1146803 ggatcattttaacttgtataataaaatatgatttgtcactcacccattatcataattatga 1146863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 80; Significance: 4e-37; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 425 - 600
Target Start/End: Complemental strand, 19726 - 19551
Alignment:
Q  425 cactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttag 524  Q
    |||||||||| ||||||  ||||||||   | ||||  || |||| |||||||| ||||||| |||||| | ||| | ||| | ||||||||||||||||    
T  19726 cactacaagacaatcacggatttgctatggagcaaagcgtagctatctcacagctaatttctagcaaaattgattcacctatcatttagttgtgatttag 19627  T
Q  525 ctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaata 600  Q
    |||||| |||| ||||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||    
T  19626 ctgtcatactggccgtagcatggattgggcggcaaattatcaatcaaaatatttcctagctaatttgcaactaata 19551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 428 - 563
Target Start/End: Complemental strand, 32933494 - 32933359
Alignment:
Q  428 tacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctg 527  Q
    |||||||||||||||  |||||||| ||||||||||| ||||||||   || | ||||| |||||||||||||||||||| ||| |||||||||||||||    
T  32933494 tacaagaaaatcactggtttgctacgaaacaaatggtagctaactcgttgctagtttctagcaaaactcatttagctaccattttgttgtgatttagctg 32933395  T
Q  528 tcaaactgtccgtagcatggattgtgcggcaaatta 563  Q
    ||| || | ||||||||||||||| ||||| |||||    
T  32933394 tcacaccggccgtagcatggattgggcggctaatta 32933359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 422 - 551
Target Start/End: Original strand, 17198481 - 17198610
Alignment:
Q  422 gaacactacaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatt 521  Q
    ||||||||||||||||||||| ||||||||| ||||||||    || ||| |  ||| ||||||| | ||||| |||||||||| | |||||||||||||    
T  17198481 gaacactacaagaaaatcactgatttgctacgaaacaaatcagagccaacgcgtagctaatttctaggaaaacacatttagctatcatttagttgtgatt 17198580  T
Q  522 tagctgtcaaactgtccgtagcatggattg 551  Q
    ||||||||| ||||  ||||||||||||||    
T  17198581 tagctgtcatactggtcgtagcatggattg 17198610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 495 - 603
Target Start/End: Complemental strand, 39834992 - 39834883
Alignment:
Q  495 tcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggatt-gtgcggcaaattatcaaataaaatatttcctagctaatttgca 593  Q
    ||||||| ||||| |||||| ||||||||||||||| |||| |||||||||||||| | ||||||||||  | |  |||||||||||||||||||| |||    
T  39834992 tcatttacctaccatttagtcgtgatttagctgtcatactggccgtagcatggattggggcggcaaattgcctagcaaaatatttcctagctaattggca 39834893  T
Q  594 actaatattt 603  Q
    ||||||||||    
T  39834892 actaatattt 39834883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 600
Target Start/End: Original strand, 29828121 - 29828178
Alignment:
Q  543 catggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaata 600  Q
    ||||||||| | ||||||||||| || ||||||||||| ||||||||| |||||||||    
T  29828121 catggattgggtggcaaattatctaagaaaatatttccaagctaatttacaactaata 29828178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 4028209 - 4028321
Alignment:
Q  114 ttattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaaccatct 213  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||  |||||||||| ||||||||| | || |||||| ||||||||||| ||| |    
T  4028209 ttattaggatcattttaccttggataataaaaagtggtttgtcaatcattcattatcataattatgattatgcagtatatgaaaaattaataaagcattt 4028308  T
Q  214 tgtaattatgaat 226  Q
    | |||||||||||    
T  4028309 tataattatgaat 4028321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 480 - 599
Target Start/End: Original strand, 26925134 - 26925254
Alignment:
Q  480 aatttcttgcaaaactcatttagctaccc-tttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatattt 578  Q
    ||||||| |||||||||| ||||||||   ||| |||||||||||| | |||||||| |||| |||||||||| |||||||||||   |  |||||||||    
T  26925134 aatttctagcaaaactcaattagctacaaatttggttgtgatttaggtatcaaactggccgtggcatggattgggcggcaaattacatagcaaaatattt 26925233  T
Q  579 cctagctaatttgcaactaat 599  Q
    ||||||| ||| |||||||||    
T  26925234 cctagcttattcgcaactaat 26925254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 444 - 603
Target Start/End: Complemental strand, 12051017 - 12050858
Alignment:
Q  444 atttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagc 543  Q
    ||||||||| |||| |||||| | |||| |  ||| |||| || |||||||||||||||||||  |||||||| || | |||||||| |||  |||||||    
T  12051017 atttgctacgaaactaatggtcgttaacacgtagctaattcctagcaaaactcatttagctactatttagttgggaatcagctgtcatactagccgtagc 12050918  T
Q  544 atggattgtgcggcaaattatcaaataaaatatttcctagctaatttgcaactaatattt 603  Q
     ||||||| |||| |||||| | |    |||||||||||||||| | ||| |||||||||    
T  12050917 ctggattgggcggaaaattacctagcctaatatttcctagctaagtggcatctaatattt 12050858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 480 - 603
Target Start/End: Original strand, 27056859 - 27056982
Alignment:
Q  480 aatttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttc 579  Q
    ||||||| |||||||||||||| ||||| |||||||||||||||||||||| |||| || |||||||||||| |||||| |||  | |  ||||||||||    
T  27056859 aatttctagcaaaactcatttacctaccatttagttgtgatttagctgtcatactggccctagcatggattgggcggcacattgcctagaaaaatatttc 27056958  T
Q  580 ctagctaatttgcaactaatattt 603  Q
    ||||  |||| |||||||||||||    
T  27056959 ctagaaaattggcaactaatattt 27056982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 429 - 562
Target Start/End: Original strand, 27383077 - 27383210
Alignment:
Q  429 acaagaaaatcacttatttgctacaaaacaaatggttgctaactcacagccaatttcttgcaaaactcatttagctaccctttagttgtgatttagctgt 528  Q
    |||||||||||||  ||||||||  | |||||| |  |||||| || ||| ||||||| ||||||| || ||| ||||| ||||||||||||||||||||    
T  27383077 acaagaaaatcacggatttgctaggagacaaatcgaagctaacgcatagctaatttctagcaaaacacagttacctaccatttagttgtgatttagctgt 27383176  T
Q  529 caaactgtccgtagcatggattgtgcggcaaatt 562  Q
    || |||| ||||||||||||||| ||||||||||    
T  27383177 catactggccgtagcatggattgggcggcaaatt 27383210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 685
Target Start/End: Original strand, 22915564 - 22915693
Alignment:
Q  556 gcaaattatcaaataaaatatttcctagctaatttgcaactaatattttaagatgcctagccaaaacccaactaatctgtagtcaaatatcggttaaaag 655  Q
    |||||||||| |  ||||||||||||| || ||||| |||||| ||||||| |  |||||| ||  ||||| |||| ||||| ||||||| ||| |||||    
T  22915564 gcaaattatctatcaaaatatttcctaactcatttgtaactaaaattttaaaactcctagctaattcccaattaatatgtagccaaatattggtcaaaag 22915663  T
Q  656 tataagttccgcaactaaatggcttggata 685  Q
    | || ||| || | | |||||||| |||||    
T  22915664 tttatgtttcgtacccaaatggctaggata 22915693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 483 - 581
Target Start/End: Original strand, 2895 - 2993
Alignment:
Q  483 ttcttgcaaaactcatttagctaccctttagttgtgatttagctgtcaaactgtccgtagcatggattgtgcggcaaattatcaaataaaatatttcct 581  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||| |||| |||| |||||||||| ||||||||||||| |  ||||||||||||    
T  2895 ttctagcaaaactcatttagctactatttagttgtgatttagctgtcatactggccgtggcatggattgggcggcaaattatctagcaaaatatttcct 2993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 29352201 - 29352108
Alignment:
Q  114 ttattaggatcattttatcttgaataataaaaagtggtttgtcaatcacccattatcatatttatgattacgaagcatatgataaattaataaa 207  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||| ||| | ||||| ||| |||| ||||||    
T  29352201 ttattaggatcattttaccttgaataataaaaagtggtttgtaaatcactcattatcataattatggttatgcagcatttgaaaaatcaataaa 29352108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 34325616 - 34325655
Alignment:
Q  114 ttattaggatcattttatcttgaataataaaaagtggttt 153  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  34325616 ttattaggatcattttaccttggataataaaaagtggttt 34325655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University