View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_high_11 (Length: 363)
Name: NF19065_high_11
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 52675017 - 52675370
Alignment:
| Q |
10 |
aagaatatcaataaaagaagataaaacacacacccattaagaggctcgtgctaacatttaattagacgaagcattagacaacatgaaagttgcgaaaccg |
109 |
Q |
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| T |
52675017 |
aagaaaatcaataaaagaagataaaacacacacccattgagaggctcgtgctaacatttaattagacgaggcattagacaacatggaagttgcgaaaccg |
52675116 |
T |
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| Q |
110 |
aagtgaaatcaaagcagattgtcaaacctacatgggatggaatcttgtggtgatttccgtaaagaggaaggaggagaaggtggcgatttccacatgcatc |
209 |
Q |
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| T |
52675117 |
aagtgaaatcaaagcagattatcaaacctacatgggatggaatcttgtggtgatttccgtaaagaggaaggaggagaaggtggcgatttccatatgcatc |
52675216 |
T |
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| Q |
210 |
gttgcagcaaaagattgagaaatataaaatgttgaataagagatattatgaacttgtggcttgaatattgttaatgcatggggacgaagcatagaatgga |
309 |
Q |
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| T |
52675217 |
gttgcagcaaaagattgagaaatataaaatgttgaataagagatattatgaacttgtggcttgaatattgttaatgcatggggacgaagcatggaatgga |
52675316 |
T |
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| Q |
310 |
aggaaaaaaggatcaaagtggtgactgagttaattctgtgtgtagacataaggt |
363 |
Q |
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| T |
52675317 |
aggaaaaaaggatcaaagtggtgactgagttaattctgtgtgtagacataaggt |
52675370 |
T |
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