View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_high_13 (Length: 329)
Name: NF19065_high_13
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 39296708 - 39297024
Alignment:
| Q |
1 |
ggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttcagttcattttgctgga |
100 |
Q |
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| T |
39296708 |
ggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttcagttcattttgctgga |
39296807 |
T |
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| Q |
101 |
ttaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctcttgcagaaaagtaaggctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296808 |
ttaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctcttgcagaaaagtaaggctg |
39296907 |
T |
|
| Q |
201 |
atgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaaggacaaaattattgttca |
300 |
Q |
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| T |
39296908 |
atgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaaggacaaaattattgttca |
39297007 |
T |
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| Q |
301 |
tgatactgttgtctctg |
317 |
Q |
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|||||||||||| |||| |
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| T |
39297008 |
tgatactgttgtttctg |
39297024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 39289828 - 39290144
Alignment:
| Q |
1 |
ggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttcagttcattttgctgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39289828 |
ggatcacatgatgctagctggtgcagttggtgattttacaaaatcattagtttcttcacctcctaaacatctttggattcgttcagttcattttgctgga |
39289927 |
T |
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| Q |
101 |
ttaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctggaatttgtgtgttcctatcatatctcttgcagaaaagtaaggctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||| |||||||| |
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| T |
39289928 |
ttaccttatctagtgaatttgtatcaaaaagtgcttttagtagcaacaggttctgggatttgtgtgttcttatcatttctgttgcagaaaaataaggctg |
39290027 |
T |
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| Q |
201 |
atgtgtatttgatttgggtggctaaagatattgaactgaactttggaaatgagataaaggaaatggtagagaaatatcccaaggacaaaattattgttca |
300 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||| ||||||||| || |||||||||| |||||||| |
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| T |
39290028 |
atgtgtgcttgatttgggtggctaaagatattgaaatgaactttggaaaagagataaaggaattggtggagaaatattccgaggacaaaatcattgttca |
39290127 |
T |
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| Q |
301 |
tgatactgttgtctctg |
317 |
Q |
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|||||||| ||| |||| |
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| T |
39290128 |
tgatactgctgtttctg |
39290144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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