View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19065_high_17 (Length: 302)
Name: NF19065_high_17
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 2 - 283
Target Start/End: Original strand, 6584085 - 6584366
Alignment:
| Q |
2 |
tgaagatcacggttcaagtatgagcgaagaagaaaaatattaatctaacaataaattactaatattattgtttaaaaaataatacaacattattgcgttt |
101 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
6584085 |
tgaagattacggttcaagtatgagcaaagaagaaaaatattaatctaacaataaattactaatattgttgtttaaaaaataatacaacattattgtgttt |
6584184 |
T |
|
| Q |
102 |
gaagaaaaatgaagagtacaaatcattgattaaataatttctagaaactaaaacaagctaaactaatccataattgaaaccgcaaaatctcaaagatttt |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
6584185 |
gaagaaaaatgaagagtacaaatcattgattaaataatttctagaaactaaaacaagctaaactaatccataattgaaaccgcaaaatctcagagatttt |
6584284 |
T |
|
| Q |
202 |
ccaagtcaataatatcttgagtacaactcaatgtgacttgacagagagtactgtgaagttgggcaatgaatttggtgccttc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6584285 |
ccaagtcaataatatcttgagtacaactcaatgtgacttgacagagagtaatgtgaagttgggcaatgaatttggtgccttc |
6584366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 12005148 - 12005192
Alignment:
| Q |
23 |
gagcgaagaagaaaaatattaatctaacaataaattactaatatt |
67 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
12005148 |
gagcgaagtaggaaaatattaatctaacaattaattattaatatt |
12005192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 55417450 - 55417486
Alignment:
| Q |
32 |
agaaaaatattaatctaac-aataaattactaatatt |
67 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
55417450 |
agaaaaatattaatctaacaaataaattactaatatt |
55417486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University