View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_high_20 (Length: 264)
Name: NF19065_high_20
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 1465175 - 1465034
Alignment:
| Q |
7 |
gaagaatataaagaaatatgctgagtaattatctaagagagaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgt |
106 |
Q |
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| T |
1465175 |
gaagaaaataaagaaatatgttgagtaattatctaagagagaaagaaaagggatggaaagacatgaaaaaacaaggtttgatatagaaaatctaaaatgt |
1465076 |
T |
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| Q |
107 |
aaagatcttatgttaacaacttaatcctattaattttcaata |
148 |
Q |
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| T |
1465075 |
aaagatcttatgttaacaacttgatcctattaattttcaata |
1465034 |
T |
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Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 26792767 - 26792673
Alignment:
| Q |
58 |
gatggaaagaca-tgaaaaaacaaggtttgatatagaaaatct-aaaatgtaaagatct--tatgttaacaacttaatcctattaattttcaata |
148 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| || | ||||||||||| |
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| T |
26792767 |
gatggaaagacaatgaaaaaacaaggtttgatataggaaatctaaaaatgtaaagatcttatatgttaacaacttaatgctgtaaattttcaata |
26792673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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