View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19065_high_23 (Length: 253)
Name: NF19065_high_23
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 44154724 - 44154956
Alignment:
| Q |
18 |
cattaatcagccaaaggaattttaaacacgcacaaattgaactaatcgtcatgatagaaagaacattattattaataaattaagcacgcaaacgaaatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154724 |
cattaatcagccaaaggaattttaaacacgcacaaattgaactaatcgtcatgatagaaagaacattattattaataaattaagcacgcaaacgaaatca |
44154823 |
T |
|
| Q |
118 |
atcagagagaacaatgatgataccactgcgactgagaatctgtttctgctccctaagactcggattcaccattggaatttgaactacgaatatgttgttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44154824 |
atcagagagaacaatgatgataccactgcgactgagaatctgtttcggctccctcagactcggattcaccattggaatttgaactacgaatatgttgttg |
44154923 |
T |
|
| Q |
218 |
cttctcacaaatattttgagttcgtgagaatat |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
44154924 |
cttctcacaaatattttgagttcgtgagaatat |
44154956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 40899480 - 40899565
Alignment:
| Q |
52 |
aattgaactaatcgtcatgatagaaagaacattattattaataaattaagcacgcaaacgaaatcaatcagagagaacaatgatgatacc |
141 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
40899480 |
aattgaactaatcatcatgatagaa----cattattattaataaattaagcacgcaagtgaaaacaatcagagagaacaatgataatacc |
40899565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 40894519 - 40894477
Alignment:
| Q |
93 |
taaattaagcacgcaaacgaaatcaatcagagagaacaatgat |
135 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||||||||||| |
|
|
| T |
40894519 |
taaattaagcacgcaaatgaaatcaaccagaaagaacaatgat |
40894477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University