View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19065_high_24 (Length: 253)
Name: NF19065_high_24
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_24 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 120 - 253
Target Start/End: Original strand, 14786524 - 14786657
Alignment:
| Q |
120 |
taacagacatatatagacttaacttcctttaagtaattgtagcatgttaagatcctctctatttttctccttccattttttctttgattactatggtttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14786524 |
taacagacatatatagacttaacttcctttaagtaattgaagcattttaagatcctctctatttttctccttccattttttctttgattactatggtttt |
14786623 |
T |
|
| Q |
220 |
aaagagttttacactactagaaaaaacaaaatta |
253 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
14786624 |
aaagagttttacactattagaaaaaacaaaatta |
14786657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 14786423 - 14786485
Alignment:
| Q |
19 |
tcttctgcttcaacttgttattattctttatttttattatttggtgtgaaaggaactttcatg |
81 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14786423 |
tcttctgcttcaacttgttattattctttatttttattatttggtgtgaaaggaactttcatg |
14786485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University