View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19065_high_4 (Length: 570)

Name: NF19065_high_4
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19065_high_4
NF19065_high_4
[»] chr1 (9 HSPs)
chr1 (16-570)||(3357379-3357937)
chr1 (353-422)||(16283783-16283852)
chr1 (515-563)||(14341535-14341583)
chr1 (508-563)||(33142510-33142565)
chr1 (508-570)||(1851478-1851540)
chr1 (509-563)||(14975994-14976048)
chr1 (353-403)||(17266089-17266139)
chr1 (493-570)||(52206568-52206645)
chr1 (499-563)||(20987929-20987993)
[»] chr5 (8 HSPs)
chr5 (493-570)||(40035950-40036027)
chr5 (515-563)||(8249641-8249689)
chr5 (508-563)||(22438001-22438056)
chr5 (493-563)||(26261620-26261690)
chr5 (444-570)||(15829877-15830004)
chr5 (499-563)||(8299484-8299548)
chr5 (495-563)||(10829286-10829354)
chr5 (527-563)||(22113428-22113464)
[»] chr4 (10 HSPs)
chr4 (519-566)||(11527199-11527246)
chr4 (508-570)||(23805198-23805260)
chr4 (499-563)||(5320280-5320344)
chr4 (515-563)||(40434021-40434069)
chr4 (509-563)||(16698745-16698799)
chr4 (508-563)||(36653032-36653087)
chr4 (508-563)||(48639426-48639481)
chr4 (501-563)||(34462276-34462338)
chr4 (517-558)||(6355237-6355278)
chr4 (499-563)||(29553103-29553167)
[»] chr7 (13 HSPs)
chr7 (444-563)||(20704776-20704895)
chr7 (444-563)||(20872820-20872939)
chr7 (509-563)||(48778887-48778941)
chr7 (508-564)||(4344633-4344689)
chr7 (508-563)||(45871546-45871601)
chr7 (490-567)||(23687497-23687574)
chr7 (509-570)||(24534707-24534768)
chr7 (507-567)||(18342293-18342353)
chr7 (495-563)||(19322923-19322991)
chr7 (509-563)||(7288130-7288184)
chr7 (517-563)||(29917012-29917058)
chr7 (509-563)||(33820861-33820915)
chr7 (499-563)||(18317139-18317203)
[»] chr6 (9 HSPs)
chr6 (445-563)||(12665621-12665738)
chr6 (445-570)||(17295443-17295569)
chr6 (495-563)||(17577019-17577087)
chr6 (495-545)||(1214621-1214671)
chr6 (508-570)||(8754261-8754323)
chr6 (517-563)||(20497678-20497724)
chr6 (444-504)||(2895022-2895082)
chr6 (444-504)||(7217693-7217753)
chr6 (517-565)||(17110435-17110483)
[»] chr3 (10 HSPs)
chr3 (444-570)||(17914385-17914511)
chr3 (444-570)||(45723063-45723187)
chr3 (508-563)||(52907344-52907399)
chr3 (508-570)||(21085228-21085290)
chr3 (515-559)||(22734029-22734073)
chr3 (508-563)||(15028782-15028837)
chr3 (499-570)||(43754442-43754512)
chr3 (508-570)||(21080639-21080701)
chr3 (444-504)||(17153150-17153210)
chr3 (536-564)||(41367598-41367626)
[»] chr2 (8 HSPs)
chr2 (509-563)||(355189-355243)
chr2 (517-563)||(44028515-44028561)
chr2 (508-570)||(23479779-23479841)
chr2 (517-568)||(27501153-27501204)
chr2 (515-570)||(42051574-42051629)
chr2 (509-563)||(45717936-45717990)
chr2 (499-563)||(11197126-11197190)
chr2 (502-570)||(18713064-18713132)
[»] scaffold0003 (1 HSPs)
scaffold0003 (444-563)||(224011-224130)
[»] chr8 (5 HSPs)
chr8 (499-563)||(33178607-33178672)
chr8 (515-559)||(5585479-5585523)
chr8 (516-570)||(9741509-9741563)
chr8 (517-563)||(23942879-23942925)
chr8 (519-561)||(26774551-26774593)
[»] scaffold0048 (1 HSPs)
scaffold0048 (515-563)||(63602-63650)


Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 16 - 570
Target Start/End: Original strand, 3357379 - 3357937
Alignment:
Q  16 cactcccccactaactcctcttcccaatcaaagagctcatgtcgtcacttccacgcctctctattcactccatataatctacattttgttctcagctaac 115  Q
    ||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||| ||||||||||| |||||||    
T  3357379 cactccctcactaactcctcttcccaatcaaagagcttatgccgtcacttccacgcctctccattgactccatataatcttcattttgttcttagctaac 3357478  T
Q  116 tcgtataatctatcgaaccgaacaaaaaaggtacaccatccaacccatggtccctccaaaatagagtgctctcaaccaatattataactaaccaaccaac 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3357479 tcatataatctatcgaaccgaacaaaaaaggtacaccatccaacccatggtccctccaaaatagagtgctctcaaccaatattataactaatcaaccaac 3357578  T
Q  216 attcgccaaacaaccaccctctctaatcctattcaaatgttgccttaacataaccacttccttccacaaaacacaatctatcatctttctctccataccc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||    
T  3357579 attcgccaaacaaccaccctctctaatcctattcaaatgttgccttaacataacctcttccttccacaaaacacaatctcccatctttctctccataccc 3357678  T
Q  316 agcacaaagcaccttataccacaaacttctcatttcctccaaaaccctccaacaccatttcaca---agtaaagctaaattaaaatccttcgatctccta 412  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  3357679 agcacaaagcaccttataccataaacttctcatttcctccaaaaccctccaacaccatttcacaagtagtaaagctaaattaaaatccttcgatctccta 3357778  T
Q  413 atcaccaaaccgccattata-nnnnnnncatccaaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcatta 511  Q
    |||| |||||| ||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||    
T  3357779 atcatcaaaccaccattatatttttttccatccaaatagtgtcccatttaatccgagaaattttcctaaaatattcaccaccaccccaaaaaatacatta 3357878  T
Q  512 aagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||    
T  3357879 aagatagatttaagagaaaagataatacatgagggagccttgaagaaggaaataaaata 3357937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 353 - 422
Target Start/End: Complemental strand, 16283852 - 16283783
Alignment:
Q  353 tccaaaaccctccaacaccatttcacaagtaaagctaaattaaaatccttcgatctcctaatcaccaaac 422  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||| |||||| | ||||||| | ||||||    
T  16283852 tccaaaaccctccaacaccatttgccaattaacgctaaattaaactccttcaacctcctaacccccaaac 16283783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 14341535 - 14341583
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||||||    
T  14341535 atagattcaatagaggagatgatacatgtgggagccttgaaaaaggaaa 14341583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 33142565 - 33142510
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| ||||||||| ||||||||||||||| || ||||||  ||||||||||||    
T  33142565 attaaacatagattcattagaagagataatacttgtgggagctctgaagaaggaaa 33142510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 1851540 - 1851478
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| |||||||| ||||||||||| |||  || || ||||||||||||||||| ||||||    
T  1851540 attaaaaatagattcgatagaagagatgatatctgcggaagccttgaagaaggaaaaaaaata 1851478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 14976048 - 14975994
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| |||||||| ||||||||||| |||| || ||| ||||||||||||||||    
T  14976048 ttaaaaatagattctatagaagagattatacctgcgggggccttgaagaaggaaa 14975994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 17266089 - 17266139
Alignment:
Q  353 tccaaaaccctccaacaccatttcacaagtaaagctaaattaaaatccttc 403  Q
    |||||||||||||||||||||||  ||| ||| ||||||||||| ||||||    
T  17266089 tccaaaaccctccaacaccatttgccaattaacgctaaattaaactccttc 17266139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 570
Target Start/End: Original strand, 52206568 - 52206645
Alignment:
Q  493 caccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||||||| ||| |||| ||||| |||  |||||| || |||||||| ||||  ||||||||||||| ||||||    
T  52206568 caccccaaaaaaagcactaaaaatagactcaggagaagaaatgatacatgatggaggtttgaagaaggaaagaaaata 52206645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 20987929 - 20987993
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||  |||||| |||||||||||   |||||| |||||||| ||||| |||||||||||||    
T  20987929 aaaaaatttattaaaaatagattcaatgatagagatgatacatgacggagctttgaagaaggaaa 20987993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 493 - 570
Target Start/End: Complemental strand, 40036027 - 40035950
Alignment:
Q  493 caccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||||||||  ||| || | |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  40036027 caccccaaaaaatatattcaaaagagattcaatagaggagattatacatgagggagcattgaagaaggaaataaaata 40035950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 563
Target Start/End: Original strand, 8249641 - 8249689
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||||| ||||| |||| |||||||||||||| ||||||||    
T  8249641 atagattcaatagaggagatgatacctgagggagccttgacgaaggaaa 8249689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 22438001 - 22438056
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| |||||||||||| ||||||| |||| |||||||||  ||||||||||||    
T  22438001 attaaacatagattcaatataagagattatacctgagggagctatgaagaaggaaa 22438056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 563
Target Start/End: Complemental strand, 26261690 - 26261620
Alignment:
Q  493 caccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||||   ||| || ||| |||||||||||||||| |||| ||| ||||| |||||||||||||    
T  26261690 caccccaaaaaaattattcaaaataaattcaatagaagagattatacctgaaggagctttgaagaaggaaa 26261620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 570
Target Start/End: Complemental strand, 15830004 - 15829877
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcacccc--aaaaaatgcattaaagatagattcaatagaagagataatacat 541  Q
    |||| ||| ||||||||||| | || ||||||||||| ||  |||| ||| ||||  ||||||||||||||| | ||||||||  | ||| || |||| |    
T  15830004 caaacagtctcccatttaatccaagtaattttcctaatatcctcac-atcccccccaaaaaaatgcattaaataaagattcaagggtagaaattatacct 15829906  T
Q  542 gagggagccttgaagaaggaaataaaata 570  Q
    ||||| || ||||||||||||| ||||||    
T  15829905 gagggggctttgaagaaggaaagaaaata 15829877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 8299548 - 8299484
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||  |||||| | |||||||||||||||||| |||| ||| ||||| ||||| |||||||    
T  8299548 aaaaaatttattaaacaaagattcaatagaagagattatacctgacggagctttgaaaaaggaaa 8299484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 10829286 - 10829354
Alignment:
Q  495 ccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| |||| |||||||  |||||||||| | || | ||||||| |||||||| ||||||||||||||    
T  10829286 ccccataaaaggcattaagaatagattcaagaaaaaatataatacttgagggagtcttgaagaaggaaa 10829354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 527 - 563
Target Start/End: Complemental strand, 22113464 - 22113428
Alignment:
Q  527 gaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  22113464 gaagaaataatacctgagggagccttgaagaaggaaa 22113428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 519 - 566
Target Start/End: Complemental strand, 11527246 - 11527199
Alignment:
Q  519 attcaatagaagagataatacatgagggagccttgaagaaggaaataa 566  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  11527246 attcaatagaggagataatacatgagggagccttgaagaaggaaataa 11527199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 23805260 - 23805198
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| ||||||||||||||||| || ||||||| || ||||||||||||||||| ||||||    
T  23805260 attaaaaatagattcaatagaagaaatgatacatgtggaagccttgaagaaggaaagaaaata 23805198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 5320344 - 5320280
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||  |||||| ||||||| ||||||||| || ||||||| ||||||||||||||||||||    
T  5320344 aaaaaatcaattaaaaatagatttaatagaagaaattatacatgcgggagccttgaagaaggaaa 5320280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 40434069 - 40434021
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||||||    
T  40434069 atagattcaatagaggagatgatacctgagggagccttgaagaaggaaa 40434021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 16698799 - 16698745
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| ||||| |||||||||||||| |||| |||||||||| ||||||||||||    
T  16698799 ttaaaaatagactcaatagaagagattatacttgagggagccatgaagaaggaaa 16698745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 36653032 - 36653087
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| ||||||||||| ||||| || ||||||| |||||| |||||||||||||    
T  36653032 attaaatatagattcaatggaagaaatgatacatgcgggagctttgaagaaggaaa 36653087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 48639481 - 48639426
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| |||||||||||||| || || ||||||| |||||| |||||||||||||    
T  48639481 attaaaaatagattcaatagaggaaatgatacatgcgggagctttgaagaaggaaa 48639426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 563
Target Start/End: Complemental strand, 34462338 - 34462276
Alignment:
Q  501 aaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||||| ||| ||||||  ||| | |||||||||||||| |||||||||| |||||    
T  34462338 aaaatgcattaaaaatatattcaagggaataaataatacatgagggggccttgaagagggaaa 34462276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Complemental strand, 6355278 - 6355237
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaa 558  Q
    |||||||||||||||||| |||||||  ||||||||||||||    
T  6355278 agattcaatagaagagatgatacatgcaggagccttgaagaa 6355237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 29553167 - 29553103
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||  |||||| | ||||||||| |||||||| |||| ||| ||||| |||||||||||||    
T  29553167 aaaaaatttattaaataaagattcaatggaagagattatacctgacggagctttgaagaaggaaa 29553103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 563
Target Start/End: Complemental strand, 20704895 - 20704776
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatga 543  Q
    |||||| | ||||||||||| | ||| | |||||||||||  |||||| ||||||||||||   | |||| ||||| |||| |||||| ||||||| |||    
T  20704895 caaatattatcccatttaatccaagagagtttcctaaaatcctcaccaccaccccaaaaaaattaataaaaatagagtcaagagaagaaataatacctga 20704796  T
Q  544 gggagccttgaagaaggaaa 563  Q
    |||||| |||||||| ||||    
T  20704795 gggagctttgaagaaagaaa 20704776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 563
Target Start/End: Complemental strand, 20872939 - 20872820
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatga 543  Q
    |||||| | ||||||||||| | ||| | |||||||||||  |||||| ||||||||||||   | |||| ||||| |||| |||||| ||||||| |||    
T  20872939 caaatattatcccatttaatccaagagagtttcctaaaatcctcaccaccaccccaaaaaaattaataaaaatagagtcaagagaagaaataatacctga 20872840  T
Q  544 gggagccttgaagaaggaaa 563  Q
    |||||| |||||||| ||||    
T  20872839 gggagctttgaagaaagaaa 20872820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 509 - 563
Target Start/End: Original strand, 48778887 - 48778941
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  48778887 ttaaagacagattcaatagaagaaattatacatgcgggagccttgaagaaggaaa 48778941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 4344633 - 4344689
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaat 564  Q
    |||||| |||||||||||||||||||| |||||||||||||| ||||| ||| ||||    
T  4344633 attaaacatagattcaatagaagagattatacatgagggagctttgaaaaagaaaat 4344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 563
Target Start/End: Original strand, 45871546 - 45871601
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| ||||||||||||||||| ||||||| ||| ||||| |||||||||||||    
T  45871546 attaaatatagattcaatagaagaaataatacctgaaggagctttgaagaaggaaa 45871601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 490 - 567
Target Start/End: Complemental strand, 23687574 - 23687497
Alignment:
Q  490 catcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaa 567  Q
    |||| |||||||||||  |||||| |||||||||| |||||| || |||| || ||||| ||| ||||||||||||||    
T  23687574 catccccccaaaaaataaattaaatatagattcaagagaagaaatgatacttgcgggagacttaaagaaggaaataaa 23687497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 509 - 570
Target Start/End: Original strand, 24534707 - 24534768
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    ||||| |||||||| | ||| |||||| |||||| | |||||||||||||||||||||||||    
T  24534707 ttaaaaatagattcgaaagaggagatagtacatgcgagagccttgaagaaggaaataaaata 24534768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 507 - 567
Target Start/End: Complemental strand, 18342353 - 18342293
Alignment:
Q  507 cattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaa 567  Q
    ||||||| ||||||||||    ||| || ||||||||||||||||||||||||||||||||    
T  18342353 cattaaatatagattcaaggatagaaatgatacatgagggagccttgaagaaggaaataaa 18342293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 19322991 - 19322923
Alignment:
Q  495 ccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||   |||||| |||||||||||||| || || ||||||| |||||| |||||||||||||    
T  19322991 ccccaaaaaaacaattaaaaatagattcaatagaggaaatgatacatgcgggagctttgaagaaggaaa 19322923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 563
Target Start/End: Original strand, 7288130 - 7288184
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| ||||||||||||||||| || |||| || ||| ||||||||||||||||    
T  7288130 ttaaatatagattcaatagaagaaattatacctgtgggtgccttgaagaaggaaa 7288184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 563
Target Start/End: Original strand, 29917012 - 29917058
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||||||||||  ||| ||||||||| |||||||||||||    
T  29917012 agattcaatagaagagattgtacctgagggagctttgaagaaggaaa 29917058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 33820915 - 33820861
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| ||| ||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  33820915 ttaaaaataaattcaatggaagagataatacctgatggagctttgaagaaggaaa 33820861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Complemental strand, 18317203 - 18317139
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||||||| ||||||| ||    |||||| |||| |||||| ||||||||||||||||    
T  18317203 aaaaaatgcattaaaaatagatttaaggatagagattatacttgagggggccttgaagaaggaaa 18317139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 445 - 563
Target Start/End: Original strand, 12665621 - 12665738
Alignment:
Q  445 aaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatgag 544  Q
    ||||||| ||||||||||| | ||| ||||| |||||||  ||||   | ||||||||||||||||||| ||||||| || | ||||  | |||||||||    
T  12665621 aaatagtatcccatttaatccaagatatttttctaaaatcctcactcactccccaaaaaatgcattaaa-atagatttaagacaagaattgatacatgag 12665719  T
Q  545 ggagccttgaagaaggaaa 563  Q
    |||||| ||||||||||||    
T  12665720 ggagccctgaagaaggaaa 12665738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 570
Target Start/End: Original strand, 17295443 - 17295569
Alignment:
Q  445 aaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaa-tgcattaaagatagattcaatagaagagataatacatga 543  Q
    ||||||| ||||||||||| | ||||| |||||||| ||  |||||    |||||||||| ||||||||| ||| ||| ||| ||||| |  |||||||     
T  17295443 aaatagtatcccatttaatgcaagaaagtttcctaatattctcacctctcccccaaaaaactgcattaaaaatatatttaatggaagatacgatacatgc 17295542  T
Q  544 gggagccttgaagaaggaaataaaata 570  Q
    || ||||||||||||||||| ||||||    
T  17295543 ggaagccttgaagaaggaaagaaaata 17295569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 495 - 563
Target Start/End: Complemental strand, 17577087 - 17577019
Alignment:
Q  495 ccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||  |||||| | |||||||||||||||||| |||| ||| ||||| ||||| |||||||    
T  17577087 ccccaaaaaatttattaaacaaagattcaatagaagagattatacctgacggagctttgaaaaaggaaa 17577019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 495 - 545
Target Start/End: Original strand, 1214621 - 1214671
Alignment:
Q  495 ccccaaaaaatgcattaaagatagattcaatagaagagataatacatgagg 545  Q
    ||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||    
T  1214621 ccccaaaaaatgcattaaaaatatatttaatggaagagattatacatgagg 1214671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 570
Target Start/End: Original strand, 8754261 - 8754323
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| |||||||||||||| || || |||| || ||||||||||||||| |||| ||||||    
T  8754261 attaaaaatagattcaatagaggaaatgatacctgcgggagccttgaagaaagaaagaaaata 8754323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 563
Target Start/End: Original strand, 20497678 - 20497724
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||||||||| |||||||||| ||| ||| |||||||||    
T  20497678 agattcaatagaagagatgatacatgaggaagctttgcagaaggaaa 20497724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 2895022 - 2895082
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaa 504  Q
    |||||| | ||||||||||| | ||||||||||||| |||  |||||| ||||||||||||    
T  2895022 caaatattatcccatttaatccaagaaattttcctagaatcctcaccaccaccccaaaaaa 2895082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 7217753 - 7217693
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaa 504  Q
    |||||||| ||||||||||| | |||||||||||||||||  |||||  | ||||||||||    
T  7217753 caaatagtatcccatttaatccaagaaattttcctaaaattctcaccccctccccaaaaaa 7217693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 565
Target Start/End: Complemental strand, 17110483 - 17110435
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaata 565  Q
    ||||| |||||| ||||| |||| ||||||||| |||||||||||||||    
T  17110483 agattgaatagaggagatgatacttgagggagctttgaagaaggaaata 17110435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 570
Target Start/End: Original strand, 17914385 - 17914511
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatga 543  Q
    |||||||||||||| ||||| | ||||||||||||||  |  |||| | | ||| ||||||   |||||| |||||||||||||| || || |||| ||     
T  17914385 caaatagtgtcccagttaatccaagaaattttcctaacctcctcacaaccccccaaaaaaaacaattaaaaatagattcaatagaggaaatgatacctgc 17914484  T
Q  544 gggagccttgaagaaggaaataaaata 570  Q
    |||||| ||||||||||||| ||||||    
T  17914485 gggagctttgaagaaggaaagaaaata 17914511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 570
Target Start/End: Complemental strand, 45723187 - 45723063
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatga 543  Q
    |||||| ||||||||||||| | ||  ||||||||||| |  |||| ||| ||| ||||||||||||||| |||||||||| || |||||| ||||  ||    
T  45723187 caaataatgtcccatttaatccaagtgattttcctaaatttctcac-atc-cccaaaaaaatgcattaaaaatagattcaagagtagagattatacccga 45723090  T
Q  544 gggagccttgaagaaggaaataaaata 570  Q
     || |||||||||||||||| ||||||    
T  45723089 aggggccttgaagaaggaaagaaaata 45723063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 52907399 - 52907344
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| |||||||||||||||||||| |||| ||| ||||| |||||||||||||    
T  52907399 attaaacatagattcaatagaagagattatacctgatggagctttgaagaaggaaa 52907344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 21085290 - 21085228
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| ||||||||  ||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  21085290 attaaaaatagattcggtagaagaaataatacatgcaggagccttgaagaaggaaagaaaata 21085228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 559
Target Start/End: Complemental strand, 22734073 - 22734029
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaag 559  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||    
T  22734073 atagattcaatggaagagattatacatgatggagccttgaagaag 22734029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 563
Target Start/End: Complemental strand, 15028837 - 15028782
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||| |||||||||||||| || || ||||||| |||||| |||||||||||||    
T  15028837 attaaaaatagattcaatagaggaaatgatacatgcgggagctttgaagaaggaaa 15028782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 570
Target Start/End: Complemental strand, 43754512 - 43754442
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||| |||||| | |||||| | |||||| |||||||||| || ||||||||||| ||||||||||||    
T  43754512 aaaaaatg-attaaataaagattctagagaagaaataatacatgtggaagccttgaagagggaaataaaata 43754442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 21080701 - 21080639
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| ||||||||  ||||||| || |||||||  ||||||||||||||||||| ||||||    
T  21080701 attaaaaatagattcggtagaagaaatcatacatgcaggagccttgaagaaggaaagaaaata 21080639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 17153210 - 17153150
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaa 504  Q
    |||||| | ||||||||||| | ||||||||||||| |||  |||||| ||||||||||||    
T  17153210 caaatattatcccatttaatccaagaaattttcctagaatcctcaccaccaccccaaaaaa 17153150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 564
Target Start/End: Complemental strand, 41367626 - 41367598
Alignment:
Q  536 atacatgagggagccttgaagaaggaaat 564  Q
    |||||||||||||||||||||||||||||    
T  41367626 atacatgagggagccttgaagaaggaaat 41367598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 355243 - 355189
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  355243 ttaaagacagattcaatagaagaaattatacatgcgggagccttgaagaaggaaa 355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 563
Target Start/End: Complemental strand, 44028561 - 44028515
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  44028561 agattcaatagaagagattatacatgatggagccttgaagaaggaaa 44028515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 23479841 - 23479779
Alignment:
Q  508 attaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||| || |||||||||||||| || |||||||  ||||||||||||||||||| ||||||    
T  23479841 attaaaaatggattcaatagaagaaatgatacatgcaggagccttgaagaaggaaagaaaata 23479779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 517 - 568
Target Start/End: Original strand, 27501153 - 27501204
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaataaaa 568  Q
    |||||||||||| || ||||||||||  ||||||||||||||||||| ||||    
T  27501153 agattcaatagaggaaataatacatgcaggagccttgaagaaggaaagaaaa 27501204  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 570
Target Start/End: Complemental strand, 42051629 - 42051574
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||| || |||||||| |||| || ||| |||||||||||||||||||||||    
T  42051629 atagattcgatggaagagattatacctgtgggtgccttgaagaaggaaataaaata 42051574  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 563
Target Start/End: Original strand, 45717936 - 45717990
Alignment:
Q  509 ttaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||| |||||||| ||||||||||| |||| || ||| ||||||||||||||||    
T  45717936 ttaaaaatagattctatagaagagattatacctgcgggggccttgaagaaggaaa 45717990  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 11197126 - 11197190
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    |||||||| |||||| |||||||||||   |||||| |||| ||| |||||||||||||| ||||    
T  11197126 aaaaaatgtattaaacatagattcaatgatagagattatacctgacggagccttgaagaatgaaa 11197190  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 502 - 570
Target Start/End: Complemental strand, 18713132 - 18713064
Alignment:
Q  502 aaatgcattaaagatagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    |||||||||||| | ||||||||   |||| || ||| ||||| |||||||||||||||||| ||||||    
T  18713132 aaatgcattaaataaagattcaaggaaagatatgatatatgagagagccttgaagaaggaaagaaaata 18713064  T

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Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 444 - 563
Target Start/End: Complemental strand, 224130 - 224011
Alignment:
Q  444 caaatagtgtcccatttaattcgagaaattttcctaaaatattcaccatcaccccaaaaaatgcattaaagatagattcaatagaagagataatacatga 543  Q
    |||||||| ||||||||||| | |||||||||||||||||  |||||  | ||||||||||   | |||| ||||||| ||  | ||| ||||||| |||    
T  224130 caaatagtatcccatttaatccaagaaattttcctaaaattctcaccccctccccaaaaaaattaataaaaatagattaaagggtagaaataatacctga 224031  T
Q  544 gggagccttgaagaaggaaa 563  Q
    |||||| |||||||| ||||    
T  224030 gggagctttgaagaaagaaa 224011  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 563
Target Start/End: Original strand, 33178607 - 33178672
Alignment:
Q  499 aaaaaatgcattaaagatagattcaatagaagagataatacatgagg-gagccttgaagaaggaaa 563  Q
    ||||||||||||||||||||||||||  ||||| || |||||||||| | ||||||||||| ||||    
T  33178607 aaaaaatgcattaaagatagattcaagggaagaaatgatacatgaggagggccttgaagaaagaaa 33178672  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 515 - 559
Target Start/End: Original strand, 5585479 - 5585523
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaag 559  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||    
T  5585479 atagattcaatggaagagattatacatgatggagccttgaagaag 5585523  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 516 - 570
Target Start/End: Original strand, 9741509 - 9741563
Alignment:
Q  516 tagattcaatagaagagataatacatgagggagccttgaagaaggaaataaaata 570  Q
    ||||||| || |||||||| ||||||| ||| |||||||||||||||| ||||||    
T  9741509 tagattctatggaagagattatacatgtgggggccttgaagaaggaaagaaaata 9741563  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 563
Target Start/End: Original strand, 23942879 - 23942925
Alignment:
Q  517 agattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||| |||||||| |||||||| ||||| |||||||||||||    
T  23942879 agattcaatggaagagattatacatgatggagctttgaagaaggaaa 23942925  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 561
Target Start/End: Complemental strand, 26774593 - 26774551
Alignment:
Q  519 attcaatagaagagataatacatgagggagccttgaagaagga 561  Q
    |||||||||||||||| |||||||| ||||| |||||||||||    
T  26774593 attcaatagaagagattatacatgacggagctttgaagaagga 26774551  T

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Target: scaffold0048 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 563
Target Start/End: Complemental strand, 63650 - 63602
Alignment:
Q  515 atagattcaatagaagagataatacatgagggagccttgaagaaggaaa 563  Q
    ||||||||||| |||||||| |||| ||| | |||||||||||||||||    
T  63650 atagattcaatggaagagattatacctgaagaagccttgaagaaggaaa 63602  T

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