View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_high_9 (Length: 382)
Name: NF19065_high_9
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 21 - 373
Target Start/End: Original strand, 14786793 - 14787154
Alignment:
| Q |
21 |
aatcggatgtcactttattgtatctatattttcaaaacctttgtaataaaaaatatagagaatataaaatatggagaagatcttgactcaacaatatcta |
120 |
Q |
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| T |
14786793 |
aatcggatgtcactttattgtatctatattttcaaaacctttgtaataaaaaatatagagaatataaaatatggagaagatcttgactcaacaatatcta |
14786892 |
T |
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| Q |
121 |
attaacttcattcacctattacacatgtttaacttcgtctagttgaaaatacagacaaccataactataaagatgagaaatcaaccaaaatttccttctt |
220 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
14786893 |
attaacttcattcacctattacacatttttaacttcgtctagttgaaaatacagacaaccataactataaatatgataaatcaaccaaaatttccttctt |
14786992 |
T |
|
| Q |
221 |
aaatcaaacaaa----------atatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaaattttccccttgtggtcaccatt |
310 |
Q |
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| T |
14786993 |
aaatcaaacaaaatatacttgcatatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaagtttt-cccttgtggtcaccatt |
14787091 |
T |
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| Q |
311 |
gtttagtcactataagcaattaataacacatacaaaatgtcgccattgtttctacagtattat |
373 |
Q |
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| T |
14787092 |
gtttagtcactataagcaattaataacacatacaaaatgtcgccattgtttctacagtattat |
14787154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 43 - 373
Target Start/End: Original strand, 15237505 - 15237845
Alignment:
| Q |
43 |
tctatattttcaaaacctttgtaataaaaaatatagagaatataaaatatggagaagatcttgactcaacaatatctaattaacttcattcacctattac |
142 |
Q |
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|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15237505 |
tctatattttcaaaacctttgtaatataaaatatagaaaatataaaatatggagaagatcttgactcaacaatatctaattaacttcattcacctattac |
15237604 |
T |
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| Q |
143 |
acatgtttaacttcgtctagttgaaaatacagacaaccataactataaagatgagaaatcaaccaaaatttccttcttaaatcaaacaaa---------- |
232 |
Q |
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| T |
15237605 |
acatgtttaacttcgtctagttgaaattacagacaaccataactataaagatgagaaatcaaccaaaatttccttcttaaatcaaacaaaatatacttgc |
15237704 |
T |
|
| Q |
233 |
atatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaaattttccccttgtggtcaccattgtttagtcactataagcaatta |
332 |
Q |
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| T |
15237705 |
atatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaaattttcctcttgtggtcaccattgtttagtcactataagcaatta |
15237804 |
T |
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| Q |
333 |
ataacacatacaaaatgtcgccattgtttctacagtattat |
373 |
Q |
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| T |
15237805 |
ataacacatacaaaatgtcgccattgtttctacagtattat |
15237845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 198 - 373
Target Start/End: Original strand, 15228006 - 15228190
Alignment:
| Q |
198 |
aaatcaaccaaaatttccttcttaaatcaaacaaaatata----------ttttgttccatttgttccctattgaccttaacagtcaacacaatagacaa |
287 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15228006 |
aaatcaaccaaaatttccttcttaaatcaaacaaaatatacttgcatatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaa |
15228105 |
T |
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| Q |
288 |
attttccccttgtggtcaccattgtttagtcactataagcaattaataacacatacaaaatgtcgccattgtttctacagtattat |
373 |
Q |
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| T |
15228106 |
gttttccc-ttgtggtcaccattgtttagtcactataagcaattaataacacatacaaaatgtcgccattgtttctacagtattat |
15228190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 43 - 373
Target Start/End: Complemental strand, 17546627 - 17546287
Alignment:
| Q |
43 |
tctatattttcaaaacctttgtaataaaaaatatagagaatataaaatatggagaagatcttgactcaacaatatctaattaacttcattcacctattac |
142 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17546627 |
tctatattttcaaaacctttgtaatataaaatatagaaaatataaaatatggagaagatcttgactcaacaatatctaattaacttcattcacctattac |
17546528 |
T |
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| Q |
143 |
acatgtttaacttcgtctagttgaaaatacagacaaccataactataaagatgagaaatcaaccaaaatttccttcttaaatcaaacaaaa--------- |
233 |
Q |
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| T |
17546527 |
acatgtttaacttcgtctagttgaaattacagacaaccataactataaagatgagaaatcaaccaaaatttccttcttaaatcaaacaaaatatacttgc |
17546428 |
T |
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| Q |
234 |
-tatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaaattttccccttgtggtcaccattgtttagtcactataagcaatta |
332 |
Q |
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| T |
17546427 |
atatattttgttccatttgttccctattgaccttaacagtcaacacaatagacaaattttcctcttgtggtcaccattgtttagtcactataagcaatta |
17546328 |
T |
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| Q |
333 |
ataacacatacaaaatgtcgccattgtttctacagtattat |
373 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
17546327 |
ataacacatacaaaatgtcgccattgtttctacagtattat |
17546287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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