View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_11 (Length: 380)
Name: NF19065_low_11
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 328
Target Start/End: Complemental strand, 36524972 - 36524666
Alignment:
| Q |
20 |
ggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcagtgcaagctttctgtactgtttccttatgatg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | | || ||||||||||||||| ||||||| |
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| T |
36524972 |
ggcttccccaatcaacttgaacgcagcttctgcaccagtaaatttatttttatcaagatgaagtagcaatccgagttttctgtactgtttctttatgatt |
36524873 |
T |
|
| Q |
120 |
gcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaa |
219 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| || ||||| |||||||||||||||||||||||||||| || |
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| T |
36524872 |
gcttcctcggagagactttctgtctgaagaattccataccagtccatatcagacttagacagcttgttaagtgcagcattgtgaacctcacaaacagtaa |
36524773 |
T |
|
| Q |
220 |
gtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttcc |
319 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||| |
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| T |
36524772 |
ggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgc--ctctacaaattcacccctttgcattctactttcc |
36524675 |
T |
|
| Q |
320 |
gccagttgc |
328 |
Q |
| |
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||||||||| |
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|
| T |
36524674 |
gccagttgc |
36524666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 36531307 - 36530999
Alignment:
| Q |
20 |
ggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcagtgcaagctttctgtactgtttccttatgatg |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
36531307 |
ggcttccccaatcaacttgaaagcagcttctgcaccagcagatttatttttatcaggatgaagtagcagtgcaagcttcttgtactgtttctttatgatt |
36531208 |
T |
|
| Q |
120 |
gcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaa |
219 |
Q |
| |
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||||||||||| | |||| | |||||||| ||||||||||||||| ||| || |||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
36531207 |
gcttcctcggataatttttcagtctgaagaactccataccagtccatatcatacttagacagcttgttgagtgcagcattgtgaacctcacaaacagcaa |
36531108 |
T |
|
| Q |
220 |
gtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttcc |
319 |
Q |
| |
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| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
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| T |
36531107 |
ggatctgagcaatgttttcaacatcagcatagagccttttggccttgttagcaaacttcagtgc--atctacaaattcacccctttgcattttagtttct |
36531010 |
T |
|
| Q |
320 |
gccagttgctt |
330 |
Q |
| |
|
||||||||||| |
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|
| T |
36531009 |
gccagttgctt |
36530999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 345
Target Start/End: Original strand, 26306032 - 26306355
Alignment:
| Q |
20 |
ggcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcagtgcaagctttctgtactgtttccttatgatg |
119 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
26306032 |
ggcttctccaatcaacttgaaagcagcttcagcaccagaaaatttatttttatcaggatgaagtagcagtgcgagctttctgtactgcgtctttatgatt |
26306131 |
T |
|
| Q |
120 |
gcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaa |
219 |
Q |
| |
|
||||||||||||| || | || |||||||||| |||| ||||||||||| ||||||||||||| || ||||||||| |||||||||||||||| |||| |
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|
| T |
26306132 |
gcttcctcggagaatctatgtgtctgaagaatttcataatagtccatttcaaacatagagagtttcttcagtgcagcaatgtgaacctcacaaactgcaa |
26306231 |
T |
|
| Q |
220 |
gtatctgagcaatgttttcaacatcagcatacagatttttggccttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttcc |
319 |
Q |
| |
|
| | ||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| ||||||||| |
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|
| T |
26306232 |
ggacctgagcaatgttttccacaccagcatacagatttttggcctttttagcaaacttcagtgc--atctacgaattcacccctttgcattttagtttcc |
26306329 |
T |
|
| Q |
320 |
gccagttgctttaccctcacagcctc |
345 |
Q |
| |
|
|||||||| || |||| |||||||| |
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|
| T |
26306330 |
gccagttgtttagcccttacagcctc |
26306355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 164 - 349
Target Start/End: Complemental strand, 36552675 - 36552492
Alignment:
| Q |
164 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagcaagtatctgagcaatgttttcaacatcagcatacagatttttggcc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36552675 |
catttcagacatagagagtttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggcc |
36552576 |
T |
|
| Q |
264 |
ttgttagcaaacttcagtgcctctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
349 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36552575 |
ttgttagcaaacttcagtgc--ctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtct |
36552492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 89 - 211
Target Start/End: Original strand, 20716220 - 20716342
Alignment:
| Q |
89 |
tgcaagctttctgtactgtttccttatgatggcttcctcggagagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttg |
188 |
Q |
| |
|
||||| |||||||||||||||| || |||| | |||||||||||| ||||||| |||||||||| ||||||||||||||||| || ||||||||||| || |
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| T |
20716220 |
tgcaatctttctgtactgtttctttgtgattgtttcctcggagagtctttctgtctgaagaatttcataccagtccatttcacacctagagagtttgctg |
20716319 |
T |
|
| Q |
189 |
agtgcagcattgtgaacctcaca |
211 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
20716320 |
agtgcagcattgtgaacctcaca |
20716342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 211
Target Start/End: Original strand, 47090583 - 47090764
Alignment:
| Q |
30 |
atcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagtagcagtgcaagctttctgtactgtttccttatgatggcttcctcgg |
129 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||| |||| | ||||| || | |
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|
| T |
47090583 |
atcaacttgaaagcagcctctgccccagcagatttatttttatcaggatgaagtagcagtgcaagctttttatactgcttctttattgttgcttcatcag |
47090682 |
T |
|
| Q |
130 |
agagactttctgcctgaagaattccataccagtccatttcagacatagagagtttgttgagtgcagcattgtgaacctcaca |
211 |
Q |
| |
|
| | || | | |||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
47090683 |
taaatttatcagtcagaagaattccataccagtccatatcagacatagagagtttgttctgtgcagcacagtgaacctcaca |
47090764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 6791535 - 6791477
Alignment:
| Q |
21 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatg |
79 |
Q |
| |
|
||||||||||||| ||| || |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
6791535 |
gcttccccaatcagcttaaatgcagcttctgcaccagcaaacttgtttttgtcaggatg |
6791477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 49156796 - 49156858
Alignment:
| Q |
21 |
gcttccccaatcaacttgaacgcagcttctgcaccagcaaatttatttttatcaggatgaagt |
83 |
Q |
| |
|
||||| ||||||| ||| || |||||||| ||||| ||||| || |||||||||||||||||| |
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|
| T |
49156796 |
gcttctccaatcagcttaaatgcagcttcagcaccggcaaacttgtttttatcaggatgaagt |
49156858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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