View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19065_low_13 (Length: 338)

Name: NF19065_low_13
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19065_low_13
NF19065_low_13
[»] chr8 (12 HSPs)
chr8 (1-319)||(15272564-15272882)
chr8 (1-319)||(15452933-15453251)
chr8 (132-319)||(15286179-15286363)
chr8 (132-319)||(15466548-15466732)
chr8 (1-102)||(15272870-15272970)
chr8 (1-102)||(15453239-15453339)
chr8 (1-57)||(15289029-15289085)
chr8 (1-57)||(15469398-15469454)
chr8 (1-30)||(15278161-15278190)
chr8 (83-116)||(15286349-15286382)
chr8 (1-30)||(15458530-15458559)
chr8 (83-116)||(15466718-15466751)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 15272882 - 15272564
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15272882 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 15272783  T
Q  101 caattataacatatacnnnnnnnngggtacaaattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaa 200  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15272782 caattataacatatactttttttttggtacaaattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaa 15272683  T
Q  201 ggcaattaaaagaaataatattgacaattagtctagaccaaaatcgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15272682 ggcaattaaaagaaataatattgacaattagtctagaccaaaaacgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatgga 15272583  T
Q  301 atcacatgccatatagacc 319  Q
    |||||||||||||||||||    
T  15272582 atcacatgccatatagacc 15272564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 15453251 - 15452933
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15453251 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 15453152  T
Q  101 caattataacatatacnnnnnnnngggtacaaattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaa 200  Q
    ||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15453151 caattataacatatactttttttttggtacaaattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaa 15453052  T
Q  201 ggcaattaaaagaaataatattgacaattagtctagaccaaaatcgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15453051 ggcaattaaaagaaataatattgacaattagtctagaccaaaaacgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatgga 15452952  T
Q  301 atcacatgccatatagacc 319  Q
    |||||||||||||||||||    
T  15452951 atcacatgccatatagacc 15452933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 319
Target Start/End: Complemental strand, 15286363 - 15286179
Alignment:
Q  132 aattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaaggcaattaaaagaaat---aatattgacaat 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| |||||||   |||||||||       
T  15286363 aattataacatatactaacaaggaaacaaggaataataactattcaatgttttgttattaccatttgaaggcaattacaagaaataataatattgacttg 15286264  T
Q  229 tagtctagaccaaaatcgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatggaatcacatgccatatagacc 319  Q
    || ||    | |||  ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  15286263 taatc----cgaaa--cgtgtggagtacatgtgaaattcattgagatgttagttttgaacctttcatatggaatcgcataccatatagacc 15286179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 132 - 319
Target Start/End: Complemental strand, 15466732 - 15466548
Alignment:
Q  132 aattataacatatactaacaaggaaacaaggaataataagtattcaatgttttgttattaagatttgaaggcaattaaaagaaat---aatattgacaat 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| |||||||   |||||||||       
T  15466732 aattataacatatactaacaaggaaacaaggaataataactattcaatgttttgttattaccatttgaaggcaattacaagaaataataatattgacttg 15466633  T
Q  229 tagtctagaccaaaatcgtgtggagtgaatgtgaaattcattgagatgttagttttaaacctttcatatggaatcacatgccatatagacc 319  Q
    || ||    | |||  ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||    
T  15466632 taatc----cgaaa--cgtgtggagtacatgtgaaattcattgagatgttagttttgaacctttcatatggaatcgcataccatatagacc 15466548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15272970 - 15272870
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||    
T  15272970 aattaaatttacatttaaaataggagtaaataaggtgttgaaggtttgaaaaaa-gtggaatcggtgggagctactcattattacaatcaattaaattta 15272872  T
Q  101 ca 102  Q
    ||    
T  15272871 ca 15272870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15453339 - 15453239
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgtggaatgggtgggagctactcattagtacaatcaaataaattta 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||    
T  15453339 aattaaatttacatttaaaataggagtaaataaggtgttgaaggtttgaaaaaa-gtggaatcggtgggagctactcattattacaatcaattaaattta 15453241  T
Q  101 ca 102  Q
    ||    
T  15453240 ca 15453239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15289085 - 15289029
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgt 57  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  15289085 aattaaatttacatttaaaataggagtaaataaggtgttgaaagtttgaaaaaacgt 15289029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15469454 - 15469398
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaataaggttttgaaggattgaaaaaacgt 57  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  15469454 aattaaatttacatttaaaataggagtaaataaggtgttgaaagtttgaaaaaacgt 15469398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15278190 - 15278161
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  15278190 aattaaatttacatttaaaataggagtaaa 15278161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 15286382 - 15286349
Alignment:
Q  83 tacaatcaaataaatttacaattataacatatac 116  Q
    ||||||||| ||||||||||||||||||||||||    
T  15286382 tacaatcaattaaatttacaattataacatatac 15286349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 15458559 - 15458530
Alignment:
Q  1 aattaaatttacatttaaaataggagtaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  15458559 aattaaatttacatttaaaataggagtaaa 15458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 15466751 - 15466718
Alignment:
Q  83 tacaatcaaataaatttacaattataacatatac 116  Q
    ||||||||| ||||||||||||||||||||||||    
T  15466751 tacaatcaattaaatttacaattataacatatac 15466718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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