View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19065_low_15 (Length: 322)
Name: NF19065_low_15
Description: NF19065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19065_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 3 - 304
Target Start/End: Original strand, 55668121 - 55668422
Alignment:
| Q |
3 |
tatattaaaagaggcaaattcaattttattgacaattatctgccaaatgaatatcacttcgattcttcctcaaaatcctatctcattgttaagattactg |
102 |
Q |
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| T |
55668121 |
tatattaaaagaggcaaattcaattttattgacaattatctgccaaatgaatatcacttcgattcttcctcaaaatcctatctcattgttaagattactg |
55668220 |
T |
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| Q |
103 |
gtctcaggtcaaataaacattggaaaagcaacaagtaaacactgaaagagatttcatgcnnnnnnnncaacaactactggattaaactaaacaatatcac |
202 |
Q |
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| T |
55668221 |
gtctcaggtcaaataaacattggaaaagcaacaagtaaacactgaaagagatttcatgcaaaaaaaacaacaactactggattaaactaaacaatatcac |
55668320 |
T |
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| Q |
203 |
tcttggaaaaggtctcagttgattgatccctaactaaagccaatccttacgaatatcaaaagtgtagctgatatccaaatacgactttttgtcatcgtca |
302 |
Q |
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| T |
55668321 |
tcttggaaaaggtctcagttgattgatccctaactaaagccaatccttacgaatatcaaaagtgtagctgatatccaaatacgactttttgtcatcgtca |
55668420 |
T |
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| Q |
303 |
ac |
304 |
Q |
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|| |
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| T |
55668421 |
ac |
55668422 |
T |
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